FC868598
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 2.452e-34 Identity = 68/107 (63.55%), Postives = 86/107 (80.37%), Query Frame = 1 Query: 163 IIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDNSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKFIWEFNFRDFD 483 I+IR+VWA NLESEF+LI +++ YPFISMDTEFPG++Y+ D+D R+ P+ Y +LKSNVDAL+LIQVGLTLSD+ GNLPDLG + N ++IWEFNFRDFD Sbjct: 12 IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLD-----VLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFD 113
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 2.075e-33 Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 1 Query: 163 IIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDNSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKFIWEFNFRDFD 483 ++ REVWA NLESEFELIS++ID YPFISMDTEFPG++++ D+ R P D Y +LK+NVDAL+LIQVGLTLSD +GNLPDLG + FIWEFNFRDFD Sbjct: 17 VVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDL--------RFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFD 115
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 6.692e-24 Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 1 Query: 163 IIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDNSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKF-IWEFNFRDFD 483 I IREVW NLESE LI +V+D +PF++MDTEFPG+V RP T + HY+ LK+NV+ L +IQ+GLT SD GNLP G+ +NK+ IW+FNFR+FD Sbjct: 10 IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY-------HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGT--DNKYCIWQFNFREFD 108
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.380e-21 Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = 1 Query: 163 IIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDNSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKFIWEFNFRDFD 483 I IREVW NL+ E +LI V+D +P+++MDTEFPG+V RP S Y HY+ LK+NV+ L +IQ+GLT S+ GNLP G+ + IW+FNFR+FD Sbjct: 10 IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY--------HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGT--DKYCIWQFNFREFD 107
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.380e-21 Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = 1 Query: 163 IIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDN-STRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKFIWEFNFRDFD 483 I IREVW NLE E LI Q ID +P+++MDTEFPG+V + N + PY + +Y LK+NV+ L LIQ+GLTLSD GNLP G+ N + IW+FNFR+F+ Sbjct: 14 IEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYE--YNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGT--NKQCIWQFNFREFN 117
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 3.108e-21 Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 1 Query: 163 IIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDNSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKF-IWEFNFRDFD 483 I+IREVW NL EF LI +++D++ +I+MDTEFPG+V +P +T Y +Y+ LK NVD L LIQVGLT SD +GNLP G+ +KF IW+FNFR+F+ Sbjct: 10 IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKP---VATFKYNNDL----NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGT---DKFCIWQFNFREFN 107
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 3.217e-18 Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 1 Query: 169 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDNSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKFIWEFNF 471 IR+VW++NL+ E LI +I+RYP +SMDTEFPG+V RP V S+ Y HY+ L++NVD+L +IQ+GL LSD GN P W+FNF Sbjct: 22 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDY--------HYQTLRANVDSLKIIQIGLALSDEEGNAP------VEACTWQFNF 109
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: POP2_YEAST (Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae GN=POP2 PE=1 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 6.707e-16 Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 1 Query: 163 IIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDNSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKFIWEFNFRDFD 483 + +R+VW SNL SEF +I Q++ +Y +S+ TEF G + RP FR K HY+ +++NVD LN IQ+GL+LSD++GN PD N W+FNF +FD Sbjct: 158 LFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARP------IGTFRS-KVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPD-----NGPSTWQFNF-EFD 251
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 8.199e-14 Identity = 44/104 (42.31%), Postives = 62/104 (59.62%), Query Frame = 1 Query: 166 IIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVD-NSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKFIWEFNFR 474 +I EVWASNLE E I +++ Y +I+MDTEFPG+V RP + S+ Y Y++L+ NVD L +IQ+GLT ++ G P G N W+FNF+ Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY--------QYQLLRCNVDLLKIIQLGLTFTNEKGEYPS----GIN--TWQFNFK 100
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 8.199e-14 Identity = 44/104 (42.31%), Postives = 62/104 (59.62%), Query Frame = 1 Query: 166 IIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVD-NSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKFIWEFNFR 474 +I EVWASNLE E I +++ Y +I+MDTEFPG+V RP + S+ Y Y++L+ NVD L +IQ+GLT ++ G P G N W+FNF+ Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY--------QYQLLRCNVDLLKIIQLGLTFTNEKGEYPS----GIN--TWQFNFK 100 The following BLAST results are available for this feature:
BLAST of FC868598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868598 ID=FC868598; Name=FC868598; organism=Citrus clementina; type=EST; length=484bpback to top |