FC868598

Overview
NameFC868598
Unique NameFC868598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13299 contig Ccv1_Contig13299:250..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.452e-34
Identity = 68/107 (63.55%), Postives = 86/107 (80.37%), Query Frame = 1
Query:  163 IIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDNSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKFIWEFNFRDFD 483
            I+IR+VWA NLESEF+LI  +++ YPFISMDTEFPG++Y+ D+D       R+  P+  Y +LKSNVDAL+LIQVGLTLSD+ GNLPDLG + N ++IWEFNFRDFD
Sbjct:   12 IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLD-----VLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFD 113          
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.075e-33
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 1
Query:  163 IIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDNSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKFIWEFNFRDFD 483
            ++ REVWA NLESEFELIS++ID YPFISMDTEFPG++++ D+        R   P D Y +LK+NVDAL+LIQVGLTLSD +GNLPDLG   +  FIWEFNFRDFD
Sbjct:   17 VVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDL--------RFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFD 115          
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 6.692e-24
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  163 IIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDNSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKF-IWEFNFRDFD 483
            I IREVW  NLESE  LI +V+D +PF++MDTEFPG+V RP     T   +       HY+ LK+NV+ L +IQ+GLT SD  GNLP  G+  +NK+ IW+FNFR+FD
Sbjct:   10 IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY-------HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGT--DNKYCIWQFNFREFD 108          
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.380e-21
Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  163 IIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDNSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKFIWEFNFRDFD 483
            I IREVW  NL+ E +LI  V+D +P+++MDTEFPG+V RP     S   Y        HY+ LK+NV+ L +IQ+GLT S+  GNLP  G+  +   IW+FNFR+FD
Sbjct:   10 IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY--------HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGT--DKYCIWQFNFREFD 107          
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.380e-21
Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = 1
Query:  163 IIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDN-STRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKFIWEFNFRDFD 483
            I IREVW  NLE E  LI Q ID +P+++MDTEFPG+V +    N +  PY    +   +Y  LK+NV+ L LIQ+GLTLSD  GNLP  G+  N + IW+FNFR+F+
Sbjct:   14 IEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYE--YNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGT--NKQCIWQFNFREFN 117          
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.108e-21
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  163 IIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDNSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKF-IWEFNFRDFD 483
            I+IREVW  NL  EF LI +++D++ +I+MDTEFPG+V +P    +T  Y        +Y+ LK NVD L LIQVGLT SD +GNLP  G+   +KF IW+FNFR+F+
Sbjct:   10 IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKP---VATFKYNNDL----NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGT---DKFCIWQFNFREFN 107          
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.217e-18
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 1
Query:  169 IREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDNSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKFIWEFNF 471
            IR+VW++NL+ E  LI  +I+RYP +SMDTEFPG+V RP  V  S+  Y        HY+ L++NVD+L +IQ+GL LSD  GN P           W+FNF
Sbjct:   22 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDY--------HYQTLRANVDSLKIIQIGLALSDEEGNAP------VEACTWQFNF 109          
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: POP2_YEAST (Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae GN=POP2 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 6.707e-16
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 1
Query:  163 IIIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDNSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKFIWEFNFRDFD 483
            + +R+VW SNL SEF +I Q++ +Y  +S+ TEF G + RP         FR  K   HY+ +++NVD LN IQ+GL+LSD++GN PD     N    W+FNF +FD
Sbjct:  158 LFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARP------IGTFRS-KVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPD-----NGPSTWQFNF-EFD 251          
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.199e-14
Identity = 44/104 (42.31%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  166 IIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVD-NSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKFIWEFNFR 474
            +I EVWASNLE E   I +++  Y +I+MDTEFPG+V RP  +  S+  Y         Y++L+ NVD L +IQ+GLT ++  G  P     G N   W+FNF+
Sbjct:   11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY--------QYQLLRCNVDLLKIIQLGLTFTNEKGEYPS----GIN--TWQFNFK 100          
BLAST of FC868598 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.199e-14
Identity = 44/104 (42.31%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  166 IIREVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVD-NSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSRGNNKFIWEFNFR 474
            +I EVWASNLE E   I +++  Y +I+MDTEFPG+V RP  +  S+  Y         Y++L+ NVD L +IQ+GLT ++  G  P     G N   W+FNF+
Sbjct:   11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY--------QYQLLRCNVDLLKIIQLGLTFTNEKGEYPS----GIN--TWQFNFK 100          
The following BLAST results are available for this feature:
BLAST of FC868598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CAF1K_ARATH2.452e-3463.55Probable CCR4-associated factor 1 homolog 11 OS=Ar... [more]
CAF1I_ARATH2.075e-3364.49Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CAF1G_ARATH6.692e-2452.78Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1F_ARATH2.380e-2148.15Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1B_ARATH2.380e-2150.93Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CAF1J_ARATH3.108e-2150.93Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1_SCHPO3.217e-1847.06Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
POP2_YEAST6.707e-1643.93Poly(A) ribonuclease POP2 OS=Saccharomyces cerevis... [more]
CNOT8_MOUSE8.199e-1442.31CCR4-NOT transcription complex subunit 8 OS=Mus mu... [more]
CNOT8_HUMAN8.199e-1442.31CCR4-NOT transcription complex subunit 8 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionC31002D10EF AbioticL1 Citrus clementina cDNA clone C31002D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868598 ID=FC868598; Name=FC868598; organism=Citrus clementina; type=EST; length=484bp
ACTCTCAAGCATCTTCAGTTACCAGCACCAGTAAGGACTTTCAAATCTCA
CCCACGAAGCGTCGAGCTGCAAGCTATTACCTGACCATCATCACTCAACA
TGGGAGTTGAAGATTAGTCTACAGATTTAGATTCAAATTCAAATTCCAGC
TCATCGGATTCGATTATAATACGCGAAGTCTGGGCGTCTAATTTGGAATC
CGAATTCGAACTCATCAGCCAAGTCATCGATCGGTACCCTTTTATTTCCA
TGGACACCGAATTCCCCGGTCTTGTCTACCGACCCGATGTGGACAACTCC
ACCAGGCCTTACTTCCGTCAACGCAAGCCGTCCGATCACTACAAGGTTCT
GAAATCCAACGTCGACGCCTTGAACTTGATCCAGGTGGGCCTCACTCTCT
CTGACTCTTCCGGTAACTTGCCGGATTTGGGCTCCAGGGGCAACAATAAA
TTCATCTGGGAGTTCAACTTCCGGGACTTCGATA
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