FC868602

Overview
NameFC868602
Unique NameFC868602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1558 contig Ccv1_Contig1558:32..484. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_SOLTU (Soluble inorganic pyrophosphatase OS=Solanum tuberosum GN=PPA PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.354e-49
Identity = 93/106 (87.74%), Postives = 99/106 (93.40%), Query Frame = 1
Query:  136 APQGSVPRLNERILSSMSRRSVAAHPWHDLEIGPGAPTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            +PQ   PRLNERILSS+SRRSVAAHPWHDLEIGP AP++FNVV+EISKGSKVKYELDKKTGLIKVDRILYSSVVYP NYGFIPRTLCEDND MDVL+LM EPVLPG
Sbjct:    9 SPQRRAPRLNERILSSISRRSVAAHPWHDLEIGPEAPSVFNVVIEISKGSKVKYELDKKTGLIKVDRILYSSVVYPQNYGFIPRTLCEDNDPMDVLVLMQEPVLPG 114          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_MAIZE (Soluble inorganic pyrophosphatase OS=Zea mays GN=IPP PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.146e-48
Identity = 94/121 (77.69%), Postives = 103/121 (85.12%), Query Frame = 1
Query:   91 MSEEAAHGDGSEAVEAPQGSVPRLNERILSSMSRRSVAAHPWHDLEIGPGAPTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            MSEE    D + A        P+LNERILSS+SRRSVAAHPWHDLEIGP AP +FNVVVEI+KGSKVKYELDKKTGLIKVDR+LYSSVVYPHNYGF+PRTLCEDND MDVL+LM EPV+PG
Sbjct:    1 MSEE----DKTAASAEQPKRAPKLNERILSSLSRRSVAAHPWHDLEIGPDAPAVFNVVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFVPRTLCEDNDPMDVLVLMQEPVVPG 117          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_HORVD (Soluble inorganic pyrophosphatase OS=Hordeum vulgare var. distichum GN=IPP PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 4.355e-48
Identity = 94/124 (75.81%), Postives = 104/124 (83.87%), Query Frame = 1
Query:   91 MSEEAAHGDGSEAVEAPQGS---VPRLNERILSSMSRRSVAAHPWHDLEIGPGAPTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            MS+E    D + A  A Q +    P+LNERILSS+SRR   AHPWHDLEIGPGAP +FNVVVEI+KGSKVKYELDKKTGLIKVDR+LYSSVVYPHNYGFIPRTLCEDND MDVL+LM EPV+PG
Sbjct:    1 MSQE----DSTSAAAAQQPTSRPAPKLNERILSSLSRRGGGAHPWHDLEIGPGAPAVFNVVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPMDVLVLMQEPVIPG 120          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_ORYSJ (Soluble inorganic pyrophosphatase OS=Oryza sativa subsp. japonica GN=IPP PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 4.983e-44
Identity = 89/120 (74.17%), Postives = 97/120 (80.83%), Query Frame = 1
Query:  103 AAHGDGSEAVEAPQGS---VPRLNERILSSMSRRSVAAHPWHDLEIGPGAPTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            A   DG    +AP GS      LNERILSSMS++ VAAHPWHDLEIGPGAP +FN VVEI +GSKVKYELDK TGLIKVDR+LYSSVVYPHNYGFIPRTLCED D MDVL+LM E V+PG
Sbjct:    2 AGEADG----KAPLGSRYPPAALNERILSSMSQKHVAAHPWHDLEIGPGAPAVFNCVVEIPRGSKVKYELDKATGLIKVDRVLYSSVVYPHNYGFIPRTLCEDGDPMDVLVLMQEQVVPG 117          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_ORYSI (Soluble inorganic pyrophosphatase OS=Oryza sativa subsp. indica GN=IPP PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 4.983e-44
Identity = 89/120 (74.17%), Postives = 97/120 (80.83%), Query Frame = 1
Query:  103 AAHGDGSEAVEAPQGS---VPRLNERILSSMSRRSVAAHPWHDLEIGPGAPTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            A   DG    +AP GS      LNERILSSMS++ VAAHPWHDLEIGPGAP +FN VVEI +GSKVKYELDK TGLIKVDR+LYSSVVYPHNYGFIPRTLCED D MDVL+LM E V+PG
Sbjct:    2 AGEADG----KAPLGSRYPPAALNERILSSMSQKHVAAHPWHDLEIGPGAPAVFNCVVEIPRGSKVKYELDKATGLIKVDRVLYSSVVYPHNYGFIPRTLCEDGDPMDVLVLMQEQVVPG 117          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR2_ARATH (Soluble inorganic pyrophosphatase 2 OS=Arabidopsis thaliana GN=PPA2 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 5.157e-41
Identity = 76/98 (77.55%), Postives = 86/98 (87.76%), Query Frame = 1
Query:  160 LNERILSSMSRRSVAAHPWHDLEIGPGAPTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            LNER  ++ + RS AAHPWHDLEIGP APT+FN VVEISKG KVKYELDK +GLIKVDR+LYSS+VYPHNYGFIPRT+CED+D MDVL+LM EPVL G
Sbjct:   24 LNERNFAAFTHRSAAAHPWHDLEIGPEAPTVFNCVVEISKGGKVKYELDKNSGLIKVDRVLYSSIVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLTG 121          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR2_CHLRE (Soluble inorganic pyrophosphatase 2 OS=Chlamydomonas reinhardtii GN=ppa2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 6.319e-31
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 1
Query:  193 RSVAAHPWHDLEIGPGAPTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLP 450
            R  A+HPWHDL  G  AP   + V+EI +GSKVKYELDK TGL  VDRILYSSVVYPHNYGF+P+TLCED D +DVL+LM EPV+P
Sbjct:    5 RGTASHPWHDLHPGNDAPNFVSCVIEIPRGSKVKYELDKDTGLCFVDRILYSSVVYPHNYGFVPKTLCEDGDPLDVLVLMQEPVVP 90          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_PYRFU (Inorganic pyrophosphatase OS=Pyrococcus furiosus GN=ppa PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.271e-23
Identity = 46/81 (56.79%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  208 HPWHDLEIGPGAPTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLP 450
            +P+HDLE GP  P +   ++EI KGS+ KYELDKKTGL+K+DR+LYS   YP +YG IPRT  ED+D  D++++M EPV P
Sbjct:    2 NPFHDLEPGPDVPEVVYAIIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPRTWYEDDDPFDIMVIMREPVYP 82          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_THELI (Inorganic pyrophosphatase OS=Thermococcus litoralis GN=ppa PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.002e-22
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 1
Query:  208 HPWHDLEIGPGAPTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            +P+HDLE GP  P +   ++EI KGS+ KYELDKKTGLIK+DR+LYS   YP +YG IP+T  +D+D  D++++M EP  PG
Sbjct:    2 NPFHDLEPGPEVPEVVYALIEIPKGSRNKYELDKKTGLIKLDRVLYSPFHYPVDYGIIPQTWYDDDDPFDIMVIMREPTYPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_PYRAB (Inorganic pyrophosphatase OS=Pyrococcus abyssi GN=ppa PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.002e-22
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1
Query:  208 HPWHDLEIGPGAPTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLP 450
            +P+HDLE GP  P +   ++EI KGS+ KYELDKKTGL+K+DR+LYS   YP +YG IPRT  +D+D  D++++M EP  P
Sbjct:    2 NPFHDLEPGPNVPEVVYALIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPRTWYDDDDPFDIMVIMREPTYP 82          
The following BLAST results are available for this feature:
BLAST of FC868602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
IPYR_SOLTU1.354e-4987.74Soluble inorganic pyrophosphatase OS=Solanum tuber... [more]
IPYR_MAIZE1.146e-4877.69Soluble inorganic pyrophosphatase OS=Zea mays GN=I... [more]
IPYR_HORVD4.355e-4875.81Soluble inorganic pyrophosphatase OS=Hordeum vulga... [more]
IPYR_ORYSJ4.983e-4474.17Soluble inorganic pyrophosphatase OS=Oryza sativa ... [more]
IPYR_ORYSI4.983e-4474.17Soluble inorganic pyrophosphatase OS=Oryza sativa ... [more]
IPYR2_ARATH5.157e-4177.55Soluble inorganic pyrophosphatase 2 OS=Arabidopsis... [more]
IPYR2_CHLRE6.319e-3169.77Soluble inorganic pyrophosphatase 2 OS=Chlamydomon... [more]
IPYR_PYRFU8.271e-2356.79Inorganic pyrophosphatase OS=Pyrococcus furiosus G... [more]
IPYR_THELI7.002e-2254.88Inorganic pyrophosphatase OS=Thermococcus litorali... [more]
IPYR_PYRAB7.002e-2254.32Inorganic pyrophosphatase OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31002E03EF AbioticL1 Citrus clementina cDNA clone C31002E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868602 ID=FC868602; Name=FC868602; organism=Citrus clementina; type=EST; length=453bp
GGTTCTGTGAAAGTGAAAGTTGACCAACCAGCAACCCTTCGATCTCTTGC
TAGTAGCTACATTTCCGTGTCTTCATCAACAATCAAAGAGATGAGTGAGG
AGGCGGCGCATGGAGATGGAAGTGAAGCTGTTGAAGCTCCACAGGGTTCA
GTTCCTCGGCTGAACGAGAGGATCCTCTCATCTATGTCGAGGAGATCAGT
TGCTGCACATCCTTGGCATGATCTTGAAATTGGACCTGGAGCTCCCACCA
TCTTCAATGTTGTTGTTGAGATATCAAAGGGAAGTAAGGTCAAATATGAA
CTTGACAAGAAAACAGGATTGATTAAGGTTGATCGAATTCTTTATTCCTC
TGTGGTCTATCCTCATAACTATGGTTTCATCCCTCGCACATTATGTGAAG
ATAATGATNCCATGGATGTCTTGATTCTTATGCACGAGCCAGTCCTTCCC
GGA
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