FC868604

Overview
NameFC868604
Unique NameFC868604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9365 contig Ccv1_Contig9365:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868604 vs. ExPASy Swiss-Prot
Match: HIBCH_XENLA (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.461e-34
Identity = 77/169 (45.56%), Postives = 110/169 (65.09%), Query Frame = 3
Query:  207 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFED--FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 704
            LNRP  LNALN  M+ ++    + WEE+P+   V++KGAG +AFC+GGD+ A+    + GK  D   ++FF   Y      GT  KP+VA++DGITMG G G+S+ G +RV ++KT+F+ PET +G  PD G  ++L  L G LG YLALTG +L G ++   G+ATH+
Sbjct:   50 LNRPKALNALNLGMIRQIYPQLKLWEEDPETYLVIIKGAGGKAFCAGGDIRAV---TDAGKVGDRLAQDFFREEYILNNAIGTCKKPYVAVIDGITMGGGVGLSVHGHFRVASEKTLFAMPETAIGLFPDVGGGYFLPRLTGKLGLYLALTGFRLKGSDVQKAGIATHF 215          
BLAST of FC868604 vs. ExPASy Swiss-Prot
Match: HIBCH_CHICK (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.198e-34
Identity = 75/182 (41.21%), Postives = 117/182 (64.29%), Query Frame = 3
Query:  168 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDF--KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 704
            VL++ +  +    LNRP  LNAL+  M+ ++    ++WE++P+   +++KG G +AFC+GGDV A+    + GK  D   +++F   Y+     GT  KP+VA++DGITMG G G+S+ G +RV T+KTVF+ PET +G  PD G  ++L  L G +G  LALTG +L G +++  G+ATH+
Sbjct:   37 VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGTGEKAFCAGGDVRAI---ADAGKAGDTMTRDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGHLLALTGFRLKGRDVLKAGIATHF 215          
BLAST of FC868604 vs. ExPASy Swiss-Prot
Match: HIBCH_XENTR (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 76/169 (44.97%), Postives = 108/169 (63.91%), Query Frame = 3
Query:  207 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFED--FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 704
            LNRP  LNALN  M+  +      WEE+P+   V++KG G +AFC+GGD+ A+    + GK  D   ++FF   Y      GT+ KP+VA++DGITMG G G+S+ G +RV ++ T+F+ PET +G  PD G  ++L  LPG LG YLALTG +L G ++   G+ATH+
Sbjct:   50 LNRPKALNALNLGMIRLIYPQLGLWEEDPETYLVIIKGVGGKAFCAGGDIRAV---TDAGKAGDRLAQDFFREEYILNNAIGTYKKPYVALIDGITMGGGVGLSVHGHFRVASENTLFAMPETAIGLFPDVGGGYFLPRLPGKLGLYLALTGFRLKGSDVQKAGIATHF 215          
BLAST of FC868604 vs. ExPASy Swiss-Prot
Match: HIBCH_SCHPO (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Schizosaccharomyces pombe GN=ehd3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.221e-33
Identity = 79/218 (36.24%), Postives = 124/218 (56.88%), Query Frame = 3
Query:   54 KSLLRIKHS-FKQVAFVSHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 704
            +SLL+   S F  +   S   R+F   P + S     D VL E +  +R   LNRP  LNA+N  M+  +     S EE+     +++KG GR+F SGGD+ A    + +GK  + ++ F   Y+  +   T+ KP VA+++GITMG G+G+++   +R+  + T+F+ PET +G+  D  ASF+ S LPGY G YL LT + + G + +  G+ATH+
Sbjct:   20 QSLLKTSVSNFLSLNASSTMSRAFIRNPKFYSTSS-NDTVLYESKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNGRSFSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFGTYLGLTSQIVKGYDCLRTGIATHF 236          
BLAST of FC868604 vs. ExPASy Swiss-Prot
Match: HIBCH_MOUSE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.595e-33
Identity = 75/185 (40.54%), Postives = 120/185 (64.86%), Query Frame = 3
Query:  165 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFV----KPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 704
            +VL+E R       LNRP  LNAL+ +M+ ++    ++WE++PD   +++KGAG +AFC+GGD+ AL    +E K +  +N  + L++  Y+    +    KP+VA++DGITMG G G+S+ G +RV T++++F+ PET +G  PD G  ++L  L G LG +LALTG +L G ++   G+ATH+
Sbjct:   36 EVLLERRGCGGVITLNRPKFLNALSLNMIRQIYPQLKTWEQDPDTFLIIIKGAGGKAFCAGGDIKAL----SEAK-KARQNLTQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYFLALTGYRLKGRDVHRAGIATHF 215          
BLAST of FC868604 vs. ExPASy Swiss-Prot
Match: HIBCH_RAT (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.553e-33
Identity = 73/181 (40.33%), Postives = 114/181 (62.98%), Query Frame = 3
Query:  165 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 704
            +VL+E R  +    LNRP  LNAL+ +M+ ++    + WE +PD   +++KGAG +AFC+GGD+ AL +    G+    ++ F   Y       +  KP+VA++DGITMG G G+S+ G +RV T++++F+ PET +G  PD G  ++L  L G LG +LALTG +L G ++   G+ATH+
Sbjct:   36 EVLLERRGCAGVITLNRPKLLNALSLNMIRQIYPQLKKWERDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKAGQTLS-QDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVHRAGIATHF 215          
BLAST of FC868604 vs. ExPASy Swiss-Prot
Match: HIBCH_HUMAN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.641e-33
Identity = 76/211 (36.02%), Postives = 123/211 (58.29%), Query Frame = 3
Query:   75 HSFKQVAFVSHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 704
            ++FK+   + H  R        S +    ++VL+E +  +    LNRP  LNAL  +M+ ++    + WE++P+   +++KGAG +AFC+GGD+  + +   + K +    FF   Y      G+  KP+VA++ GITMG G G+S+ G +RV T+K +F+ PET +G  PD G  ++L  L G LG +LALTG +L G ++   G+ATH+
Sbjct:   14 NAFKRTNTILHHLRM-------SKHTDAAEEVLLEKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEA-EKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIATHF 216          
BLAST of FC868604 vs. ExPASy Swiss-Prot
Match: HIBCH_DANRE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio GN=hibch PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.641e-33
Identity = 74/181 (40.88%), Postives = 112/181 (61.88%), Query Frame = 3
Query:  165 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 704
            +VL E   K+    LNRP  LNAL  +M+  +    + W+++ +   V++KGAG +AFC+GGD+ A+ +    G     + FF   Y      GT+ KP+VA+++GITMG G G+S+ G +RV T+KT+F+ PET +G  PD G  ++L  L G LG +LALTG +L G ++   G+ATH+
Sbjct:   33 EVLFEKVGKAGVITLNRPKALNALTLNMIRHIYPQLKKWDKDSETDIVIIKGAGEKAFCAGGDIRAIAEAGKAGNLLS-QVFFREEYILNNTIGTYQKPYVALINGITMGGGVGLSVHGQFRVATEKTLFAMPETGIGLFPDVGGGYFLPRLQGKLGLFLALTGFRLKGRDVQRVGVATHF 212          
BLAST of FC868604 vs. ExPASy Swiss-Prot
Match: HIBCH_BOVIN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Bos taurus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32
Identity = 70/185 (37.84%), Postives = 112/185 (60.54%), Query Frame = 3
Query:  165 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFV----KPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 704
            +VL+E +  +    LNRP  LN L   M+ ++    + WE++P    +++KGAG +AFC+GGD+ AL +  N  +        + L++  Y+    +    KP++A++ GITMG G G+S+ G +RV T+K+VF+ PET +G  PD G  ++L  L G LG +LALTG +L G ++   G+ATH+
Sbjct:   37 EVLLERKGCAGVITLNRPRFLNTLTLGMIRQIYAQLKKWEQDPKTFLIIIKGAGEKAFCAGGDIRALSEARNTNQ-----KMLQDLFREEYILNNAIDSCQKPYIALIHGITMGGGVGVSVHGQFRVATEKSVFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYTAGIATHF 216          
BLAST of FC868604 vs. ExPASy Swiss-Prot
Match: HIBCH_DICDI (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Dictyostelium discoideum GN=hibch PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.409e-31
Identity = 83/189 (43.92%), Postives = 109/189 (57.67%), Query Frame = 3
Query:  162 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPD-IGFVLMKGAG-RAFCSGGDVIALYQL--LNE---GKFEDFKN-FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 704
            ++VL E + K    +LNRP  LNALN +MV  L   Y   +   D  G ++MKGAG +AFC+GGD+ A+Y    LNE    K  D  + FF   Y    L GT     V+I +G  MG G G+S+ G +RV T+ TVF+ PET +GF  D G S++L  LP   G YLALTG KL G  +   G+ATH+
Sbjct:   23 EEVLFEKKGKCLKVLLNRPKALNALNPNMVKILTPKYLEMKTKKDGEGVIVMKGAGEKAFCAGGDIRAIYDYKQLNEEQKSKTNDIGDLFFREEYILNNLIGTNPIAQVSIYNGFAMGGGIGLSVHGKFRVATENTVFAMPETGIGFFCDVGGSYFLPRLPNNYGMYLALTGSKLKGNNVYLAGVATHF 211          
The following BLAST results are available for this feature:
BLAST of FC868604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
HIBCH_XENLA2.461e-3445.563-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_CHICK4.198e-3441.213-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENTR7.160e-3444.973-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_SCHPO1.221e-3336.243-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_MOUSE1.595e-3340.543-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_RAT3.553e-3340.333-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_HUMAN4.641e-3336.023-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DANRE4.641e-3340.883-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_BOVIN3.929e-3237.843-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DICDI7.409e-3143.923-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionC31002E06EF AbioticL1 Citrus clementina cDNA clone C31002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868604 ID=FC868604; Name=FC868604; organism=Citrus clementina; type=EST; length=706bp
AGGCGCCTTCTTCATCAAAATCCGAGCTTTCAAGTGGAAAAATGCAGAGA
ATCAAATCTTTGTTAAGAATAAAGCATTCATTTAAACAAGTAGCGTTTGT
GTCTCATCAACAGAGAAGCTTTTCTGCTTTACCGGATTACTCGTCAAATG
ATTATCTTCAAGACCAGGTCTTAGTTGAAGGAAGAGCTAAGTCAAGAGCA
GCTATTCTCAACAGACCCTCTAATCTGAATGCTCTTAATACTTCTATGGT
GGGTAGGCTGAAGCGATTGTATGAATCATGGGAAGAAAACCCGGACATTG
GGTTCGTCTTGATGAAGGGCGCTGGCAGGGCTTTCTGCTCTGGTGGGGAT
GTCATCGCTCTTTATCAGTTACTTAATGAAGGAAAATTTGAAGACTTTAA
AAATTTTTTTGAGACGTTATATCAGTTTGTATACCTTCAAGGAACATTTG
TAAAGCCACATGTGGCTATATTGGATGGTATCACAATGGGATGTGGAGCT
GGGATTTCGCTGCAGGGGATGTATCGTGTGGTCACTGATAAAACTGTTTT
TTCTAATCCAGAGACTCAAATGGGGTTCCATCCCGATGCAGGGGCTTCGT
TTTATCTGTCTCACCTGCCTGGTTACTTAGGAGAGTACTTGGCTCTAACT
GGAGAAAAGCTCAATGGTGTAGAAATGATTGCTTGTGGTCTTGCCACCCA
TTATAC
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