FC868606

Overview
NameFC868606
Unique NameFC868606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868606 vs. ExPASy Swiss-Prot
Match: AIFA_DICDI (Apoptosis-inducing factor homolog A OS=Dictyostelium discoideum GN=aifA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 70/176 (39.77%), Postives = 106/176 (60.23%), Query Frame = 2
Query:  167 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG------HKDPVPK-TRTERLNQYQAENQKIKSARSILIVGGGPTGAELAGEIAVDFP------EKEVTLVHKGSRLL 655
            + KRV++IG G  GS VAK L  + +VT+++ K+ F  + AS+RA+VEP   K+  I +   L NG+ +    I I+   V   +G+ + +DYLVIATG       K P+ K + TE  N Y+  +++IK A+SILIVGGG  G E+ GEI   +P       K++T+VH G++L+
Sbjct:   26 EKKRVLIIGCGFGGSQVAKLLDSNFEVTVVERKQTFFNSIASIRAIVEPELAKKIYIPYDKLLKNGKFIYGTVIEISPTLVKLEDGKELTFDYLVIATGSNSLAPFKAPLEKISGTEIFNYYKDISEQIKQAKSILIVGGGSVGCEVVGEIINKYPIKNKELAKKITIVHSGNKLV 201          
BLAST of FC868606 vs. ExPASy Swiss-Prot
Match: AIFB_DICDI (Apoptosis-inducing factor homolog B OS=Dictyostelium discoideum GN=aifB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.133e-25
Identity = 68/176 (38.64%), Postives = 100/176 (56.82%), Query Frame = 2
Query:  167 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-------KTRTERLNQYQAENQKIKSARSILIVGGGPTGAELAGEIAVDFPEKE------VTLVHKGSRLL 655
            + KRV++IGGG  G  VAK L    +VT+++ K+ F  +  S+RA+VEP   K+  I +   L NG+ +    I I+       +G+ + +DYLVIATG     P       K+ +E LN +Q  +Q+IK A+SILIVGGG    EL  EI   +P K+      +T+VH GS+L+
Sbjct:    4 EKKRVLIIGGGYGGCEVAKQLDSKFNVTVVERKQTFFHSVGSVRAVVEPELVKKIYIPYDKLLKNGKFIFGTVIEISPTLAKLEDGQELTFDYLVIATGSNSLAPFKAPLEKKSSSEILNYFQNFSQQIKQAKSILIVGGGAVACELVSEIVEKYPVKDSELVKKITIVHSGSKLV 179          
BLAST of FC868606 vs. ExPASy Swiss-Prot
Match: AIFM2_XENTR (Apoptosis-inducing factor 2 OS=Xenopus tropicalis GN=aifm2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.926e-21
Identity = 57/165 (34.55%), Postives = 92/165 (55.76%), Query Frame = 2
Query:  176 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL----VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPK------TRTERLNQYQAENQKIKSARSILIVGGGPTGAELAGEIAVDFPEKEVTLVH 637
            RVV++GGG AG   A  L+ F     L+D K+ F    A+LRA VE  F +++ I++ D      + G++V    IN+    V+      + + +L+IATG   P P       ++ + +  Y+   ++I+ A+ +++VGGG  G E+A E+  D+PEKEVTLVH
Sbjct:   12 RVVIVGGGFAGIAAATQLKSFGIPFVLVDLKDAFHHNVAALRASVESGFARKTFISYKDTFQDNFIQGKVVG---INLQTQRVILESNEELQFSHLIIATGSNGPFPGKINNVISKDQAIQVYEDLVKEIQKAKHVVVVGGGSAGVEMAAEVKTDYPEKEVTLVH 173          
BLAST of FC868606 vs. ExPASy Swiss-Prot
Match: AIFM2_XENLA (Apoptosis-inducing factor 2 OS=Xenopus laevis GN=aifm2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.097e-20
Identity = 60/165 (36.36%), Postives = 94/165 (56.97%), Query Frame = 2
Query:  176 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVN----GRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA----EN--QKIKSARSILIVGGGPTGAELAGEIAVDFPEKEVTLVH 637
            RVV++GGG AG   A  L+ F     L+D K+ F    A+LRA VE  F +++ I++ D   +    G++V    IN+    V+      + + +L+IATG   P P    E +++ QA    EN  ++I+ A+ +++VGGG  G E+A E+  D+PEKEVTL+H
Sbjct:   12 RVVIVGGGFAGIAAASQLKSFGIPFLLVDMKDAFHHNVAALRACVESGFARKTFISYKDSFHDSFKQGKVVG---INLQTQLVILESNEELSFSHLIIATGSNGPFPGKFNEVISKDQAIQIYENLVEEIQKAKHVVVVGGGSAGVEMAAEVKTDYPEKEVTLIH 173          
BLAST of FC868606 vs. ExPASy Swiss-Prot
Match: AIFM2_TAEGU (Apoptosis-inducing factor 2 OS=Taeniopygia guttata GN=AIFM2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 55/172 (31.98%), Postives = 97/172 (56.40%), Query Frame = 2
Query:  176 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT----DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQ------YQAENQKIKSARSILIVGGGPTGAELAGEIAVDFPEKEVTLVHKGSRLLE 658
            RVVV+GGG  G+  A  L+ ++    L+D ++ F    A+LRA VE  F K++ I+++    D    G++VA   I+    +V+ ++G  + Y +L++ATG   P P    + ++       Y+   ++I+ ++ IL+VGGG  G E+A EI  ++P KE+ L+H  + L +
Sbjct:   12 RVVVVGGGFGGTAAASLLKSWAVPFVLVDVRDAFHHNVAALRAAVESGFAKKTFISYSVTFGDSFRQGKVVA---IDPGRQQVVLSDGEELHYSHLILATGSDGPFPGKFNQVIDMESAIQTYEDMVKEIEKSQRILVVGGGAAGVEMAAEIKTEYPGKEIILIHSKTALAD 180          
BLAST of FC868606 vs. ExPASy Swiss-Prot
Match: AIFM2_HUMAN (Apoptosis-inducing factor 2 OS=Homo sapiens GN=AIFM2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.288e-18
Identity = 57/164 (34.76%), Postives = 89/164 (54.27%), Query Frame = 2
Query:  179 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT----DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQ------YQAENQKIKSARSILIVGGGPTGAELAGEIAVDFPEKEVTLVH 637
            VV++GGG  G   A  LQ  +    L+D K+ F    A+LRA VE  F K++ I+++    D    G +V    I++    VL   G  + + +L++ATG   P P    E  +Q      Y+   ++++ +R I++VGGG  G E+A EI  ++PEKEVTL+H
Sbjct:   14 VVIVGGGFGGIAAASQLQALNVPFMLVDMKDSFHHNVAALRASVETGFAKKTFISYSVTFKDNFRQGLVVG---IDLKNQMVLLQGGEALPFSHLILATGSTGPFPGKFNEVSSQQAAIQAYEDMVRQVQRSRFIVVVGGGSAGVEMAAEIKTEYPEKEVTLIH 174          
BLAST of FC868606 vs. ExPASy Swiss-Prot
Match: AIFM2_MOUSE (Apoptosis-inducing factor 2 OS=Mus musculus GN=Aifm2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.989e-18
Identity = 55/164 (33.54%), Postives = 89/164 (54.27%), Query Frame = 2
Query:  179 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT----DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQKIKSARSILIVGGGPTGAELAGEIAVDFPEKEVTLVH 637
            VV++GGG  G   A  LQ  +    L+D K+ F    A+LRA VE  F K++ I+++    D    G+++    I++    VL   G  + + +L++ATG   P P    E       +  Y+   ++I+ ++ I++VGGG  G E+A EI  ++PEKEVTL+H
Sbjct:   14 VVIVGGGFGGIAAASQLQALNVPFMLVDMKDSFHHNVAALRASVESGFAKKTFISYSATFKDNFRQGKVIG---IDLKNRMVLLQGGEALPFSHLILATGSTGPFPGKFNEVSCQQAAIQAYEDMVKQIQRSQFIVVVGGGSAGVEMAAEIKTEYPEKEVTLIH 174          
BLAST of FC868606 vs. ExPASy Swiss-Prot
Match: AIFM2_BOVIN (Apoptosis-inducing factor 2 OS=Bos taurus GN=AIFM2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.696e-18
Identity = 54/168 (32.14%), Postives = 91/168 (54.17%), Query Frame = 2
Query:  179 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT-DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP------KTRTERLNQYQAENQKIKSARSILIVGGGPTGAELAGEIAVDFPEKEVTLVHKGSRLLE 658
            VV++GGG  G   A  LQ  +    L+D K+ F    A+LRA VE  F K++ I+++  +  N R      I++    VL  +G+ + + +L++ATG     P       ++   +  Y+    +++ ++SI++VGGG  G E+A EI  ++PEKEVTL+H    L +
Sbjct:   14 VVIVGGGFGGIAAASQLQALNIPFVLVDMKDSFHHNVAALRASVESGFAKKTFISYSVTFKENFRQGLVVEIDLKNQTVLLEDGQALPFSHLILATGSTGLFPGKFNQVSSQQMAIQAYEDMVTQVQRSQSIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSKMALAD 181          
BLAST of FC868606 vs. ExPASy Swiss-Prot
Match: AIF1_YEAST (Apoptosis-inducing factor 1 OS=Saccharomyces cerevisiae GN=AIF1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 52/177 (29.38%), Postives = 86/177 (48.59%), Query Frame = 2
Query:  173 KRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNG-RIVASPAINITENEVLTAEGRRVVYDYLVIATGHK--DPVPKTRTERLNQ---YQAENQKIKSARSILIVGGGPTGAELAGEIAVDFPE------KEVTLVHKGSRLL 655
            K +VV+G GV G  VA    + L  +  + L+    Y     +++R  V   + K S++   + L +G  ++   A +  + EV+    R + +D LV+ATG K  DP+  T T   N    ++ E  +I  A  IL +GGG    ELAGE+   + E      K ++++H   +LL
Sbjct:    6 KNIVVVGAGVFGVSVANHLYRELGGTYAIKLVTASNYVYFLPSAVRLTVSKDYTK-SILPLKNVLDSGIEVIKDTAASFDDKEVVLGSDRAIKFDILVLATGSKWADPIGSTYTFGDNYKEYFEREASRISDADHILFLGGGFVNCELAGELLFKYLEEIRSGKKRISIIHNSDKLL 181          
The following BLAST results are available for this feature:
BLAST of FC868606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
AIFA_DICDI2.982e-2639.77Apoptosis-inducing factor homolog A OS=Dictyosteli... [more]
AIFB_DICDI1.133e-2538.64Apoptosis-inducing factor homolog B OS=Dictyosteli... [more]
AIFM2_XENTR4.926e-2134.55Apoptosis-inducing factor 2 OS=Xenopus tropicalis ... [more]
AIFM2_XENLA1.097e-2036.36Apoptosis-inducing factor 2 OS=Xenopus laevis GN=a... [more]
AIFM2_TAEGU1.342e-1831.98Apoptosis-inducing factor 2 OS=Taeniopygia guttata... [more]
AIFM2_HUMAN2.288e-1834.76Apoptosis-inducing factor 2 OS=Homo sapiens GN=AIF... [more]
AIFM2_MOUSE2.989e-1833.54Apoptosis-inducing factor 2 OS=Mus musculus GN=Aif... [more]
AIFM2_BOVIN8.696e-1832.14Apoptosis-inducing factor 2 OS=Bos taurus GN=AIFM2... [more]
AIF1_YEAST6.036e-1129.38Apoptosis-inducing factor 1 OS=Saccharomyces cerev... [more]
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Properties
Property NameValue
Genbank descriptionC31002E08EF AbioticL1 Citrus clementina cDNA clone C31002E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868606 ID=FC868606; Name=FC868606; organism=Citrus clementina; type=EST; length=676bp
ATTTTCCTTTCATTCTCTTTACTTGGAATTTGGTTAAAGCCGCGTCCTTA
TATAAGATAATGACCGGTTAAGCCCCCTAAATCGAGAATCAGATGAGAGG
CAGAAGCAAAGCAGAGCATCTGGGAAAGAATTAATGGAGAGTCGGCGGCA
ACAACAATCTGAAGGAAAGAATAAAAGAGTGGTGGTGATCGGAGGAGGGG
TTGCTGGTTCCCTGGTTGCTAAGTCTTTACAATTCAGTGCAGATGTTACC
CTCATTGACCCGAAAGAGTATTTCGAGATCACATGGGCAAGCTTAAGGGC
AATGGTGGAGCCATCTTTTGGAAAGAGATCAGTGATTAACCACACGGATT
ACCTCGTCAATGGTCGTATTGTCGCTTCTCCTGCAATCAATATCACCGAA
AATGAAGTTTTGACTGCAGAGGGCCGCCGTGTTGTGTATGATTATCTTGT
CATTGCCACCGGCCACAAGGATCCTGTCCCCAAAACTAGGACAGAGAGGC
TTAATCAATATCAAGCAGAGAATCAAAAGATTAAATCTGCTCGTTCGATT
TTGATTGTTGGAGGAGGTCCCACTGGTGCTGAGCTTGCTGGAGAAATAGC
TGTTGACTTCCCGGAGAAAGAGGTTACTCTAGTGCACAAGGGGTCGAGGT
TGCTGGAATTTATTGGACCTCAAGCC
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