FC868608

Overview
NameFC868608
Unique NameFC868608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10435 contig Ccv1_Contig10435:3..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868608 vs. ExPASy Swiss-Prot
Match: PME12_ARATH (Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.623e-53
Identity = 115/202 (56.93%), Postives = 148/202 (73.27%), Query Frame = 1
Query:  151 SSISNFCKSTPHPDACFESLKLXXXXXXXXXXXXFLLQTLQMAISEAGKVTNLLAGAG-SSNIVEKQRGTIQDCKELHQITLSALQKSLPKIR-AAHDAKTLSDARAYLSAALTNKNTCLESLNSASGYLKQPLVNSIISTYRYVSNSLSALPKPATTE-----GNKHRRRLMG-FPEWLSRKDRRILQ-SSDDDNEYDLSQ 729
            +S ++FCK+TP+PDACF SLKL            FLLQTLQ A+SEAGK+T+LL+GAG S+N+VE QRG++QDCK+LH IT S L++S+ KI+   +D++ L+DARAYLSAALTNK TCLE L SASG LK  LV S  +TY+++SNSLSALPK   T      GN   RRL+G FP+W+ +KD R L+ SSD  +EYD S+
Sbjct:   35 TSATSFCKNTPYPDACFTSLKLSISINISPNILSFLLQTLQTALSEAGKLTDLLSGAGVSNNLVEGQRGSLQDCKDLHHITSSFLKRSISKIQDGVNDSRKLADARAYLSAALTNKITCLEGLESASGPLKPKLVTSFTTTYKHISNSLSALPKQRRTTNPKTGGNTKNRRLLGLFPDWVYKKDHRFLEDSSDGYDEYDPSE 236          
BLAST of FC868608 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.833e-12
Identity = 63/205 (30.73%), Postives = 103/205 (50.24%), Query Frame = 1
Query:  151 SSISNFCKSTPHPDACFESLKLXXXXXXXXXXXXFLLQTLQMAISEAGKV-TNLLAGAGSSNIVEKQRGTIQDCKELHQITLSALQKSLPKI-----RAAHDAKTLSDARAYLSAALTNKNTCLES---LNS--ASGYLKQPLVNSIISTYRYVSNSLSALPKP----ATTEGNKHRRRLMGFPEWLSRKDRRILQSSDDDNEYD 720
            +S+   C +T +P +CF S+              F L +L++AI E     + L A A     ++K    I  C  +    L  L  S+  +     R A  A ++S+   +LSAALT+++TCL++   LNS  A G L Q +  ++ ++  + SNSL+ + K     +  E   H RRL+GFPEWL   +RR+L+  ++D+  D
Sbjct:   75 ASLKAVCDTTRYPSSCFSSISSLPESNTTDPELLFKL-SLRVAIDELSSFPSKLRANAEQDARLQK---AIDVCSSVFGDALDRLNDSISALGTVAGRIASSA-SVSNVETWLSAALTDQDTCLDAVGELNSTAARGAL-QEIETAMRNSTEFASNSLAIVTKILGLLSRFETPIHHRRLLGFPEWLGAAERRLLEEKNNDSTPD 273          
BLAST of FC868608 vs. ExPASy Swiss-Prot
Match: PME59_ARATH (Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 56/187 (29.95%), Postives = 89/187 (47.59%), Query Frame = 1
Query:  160 SNFCKSTPHPDACFESLKLXXXXXXXXXXXXFLLQTLQMAISEAGKVTNLLAGAGSSNIVEKQRGTIQDCKELHQITLSALQKSL----PKIRAAHDAKTLSDARAYLSAALTNKNTCLESLN--SASGYLKQPLVNSIISTYRYVSNSLSALPKPATTEGNKHRRRL--MGFPEWLSRKDRRILQS 696
            +++C  TP+PD C    K             F +  ++ A+  A      L  +G +    K++  + DC +L+  T+  L ++L    PK  AA    T  DA+ +LS ALTN  TC    +  + + ++   + N+ IS    +SN L A+     T GNK        GFP WLSRKD+R+L++
Sbjct:   35 TDWCDKTPYPDPCKCYFKNHNGFQQPTQLSEFRVMLVEAAMDRAISARAELTNSGKNCTDSKKQAVLADCIDLYGDTIMQLNRTLHGVSPKAGAAKSC-TDFDAQTWLSTALTNTETCRRGSSDLNVTDFITPIVSNTKIS--HLISNCL-AVNGALLTAGNKGNTTANQKGFPTWLSRKDKRLLRA 217          
The following BLAST results are available for this feature:
BLAST of FC868608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PME12_ARATH9.623e-5356.93Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME3_PHAVU2.833e-1230.73Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME59_ARATH1.076e-1129.95Probable pectinesterase/pectinesterase inhibitor 5... [more]
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Properties
Property NameValue
Genbank descriptionC31002E12EF AbioticL1 Citrus clementina cDNA clone C31002E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868608 ID=FC868608; Name=FC868608; organism=Citrus clementina; type=EST; length=732bp
ATATAGTGAATCTCTCACTCTGCCTTCTTCATATCGGCTGTCATGGCTGC
TTCCTCCTTTCTGAAACTCACCTTGCTCCTCTTCACAATCTCCATCTCCA
TCACAGCTACTCTAAGCACTCCTTCAACAACTTCTCTACACACCAACATA
TCTTCAATAAGCAATTTTTGCAAAAGCACTCCGCACCCAGATGCTTGCTT
TGAGTCATTGAAGCTCTCTATATCAATCAATATCAGTCCAAACATCATCA
ACTTCTTGCTTCAAACTCTCCAAATGGCCATTTCCGAAGCCGGGAAGGTC
ACCAATCTATTGGCCGGTGCAGGCAGCTCTAATATTGTCGAGAAACAGAG
AGGCACAATCCAAGATTGTAAAGAACTTCACCAAATCACATTATCCGCTT
TACAGAAATCTCTCCCGAAAATCCGTGCAGCTCATGATGCTAAAACCTTA
TCCGATGCAAGAGCATATCTCAGTGCAGCTTTAACAAATAAGAATACTTG
TTTAGAGAGCCTTAACTCTGCTTCAGGTTATTTGAAGCAACCTTTAGTGA
ACTCTATAATAAGTACTTACAGGTATGTGAGCAACTCCCTGTCAGCACTT
CCAAAGCCAGCTACGACAGAAGGCAACAAACACCGTCGCCGCCTAATGGG
ATTTCCAGAATGGTTGTCAAGAAAAGATCGCCGGATTCTGCAGAGCTCCG
ATGACGATAATGAGTATGACCTGAGTCAAGTG
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