FC868609

Overview
NameFC868609
Unique NameFC868609
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868609 vs. ExPASy Swiss-Prot
Match: PPL2_ARATH (PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.325e-47
Identity = 101/196 (51.53%), Postives = 122/196 (62.24%), Query Frame = 3
Query:   96 MAVSSLSLNW--VSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDI-SSDEENKSKRRLLLMXXXXXXXXXXXXXXXFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYSSAS 674
            MAVSSLS+     S T+S K  +  PN   ++    S        E        N  KRR  L+                A+EIPK+Y  FVDR DGYSY YPSDW EF+F  HDS FKDRYLQLQNVRVRFIPT+K D+H++GPMEEVV +L +H +AAPNQVA I DM+E+  DGKNYYTFEY L +P Y++ S
Sbjct:    1 MAVSSLSIRCGGFSPTISHKTEILCPNPSLKACCLLSSGGKADSSESTYQKGSGNNWKRRQALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTS 196          
BLAST of FC868609 vs. ExPASy Swiss-Prot
Match: PPL1_ARATH (PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.962e-18
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = 3
Query:  324 FAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEKSVDGKNYYTFEYILTSPNYS 665
            FA E  K + A  D  D Y+++YP  W E    G D  +KD    L++V V  +PT K+ + + GP +++   L + V A PNQ   ++D  E  VDGK YY FE+ + + NY+
Sbjct:   73 FAAESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYT 186          
The following BLAST results are available for this feature:
BLAST of FC868609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PPL2_ARATH2.325e-4751.53PsbP-like protein 2, chloroplastic OS=Arabidopsis ... [more]
PPL1_ARATH2.962e-1836.84PsbP-like protein 1, chloroplastic OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC31002F01EF AbioticL1 Citrus clementina cDNA clone C31002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868609 ID=FC868609; Name=FC868609; organism=Citrus clementina; type=EST; length=676bp
TCTGCATGGCTCCTTCCTCCTTGACCACATAAAAAGAAAAGCCTCATACA
CTCTCTGCATACAATCCAAAGCTCCCGAGTAAAAGAGTACTAAGAATGGC
AGTTTCATCACTCTCTTTGAACTGGGTTTCCACAACCCTGTCAAAGAAGT
TAAATGTGGCTTATCCAAATGAGTTAACTCGATCAGCTACTGCTTTCTCT
TGTCAAAACTTTTTCACATGCCCAGAAGATATCAGTTCCGATGAAGAAAA
CAAAAGCAAGAGGCGGCTGCTGCTGATGGGAGCTGGACTGCTTTCTGCGA
ATTTACTTCCTGCAAGTCCATTGTTTGCTCAAGAGATTCCGAAAAATTAT
GATGCTTTTGTAGACCGTATTGATGGGTACTCATATGTTTATCCCTCGGA
TTGGACAGAATTTGAGTTCACAGGACATGATTCTGGATTCAAAGACAGAT
ACTTGCAGTTGCAAAATGTTAGGGTGAGATTCATACCAACTGACAAAAAG
GATGTCCATGATTTGGGTCCTATGGAAGAGGTTGTTTCTAATCTGGCGAG
GCATGTGTATGCTGCCCCGAATCAAGTTGCTGACATACTAGATATGCAAG
AGAAATCCGTAGATGGCAAAAACTACTACACTTTCGAATATATACTTACA
TCTCCGAACTACAGTAGCGCTTCCAT
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