FC868616

Overview
NameFC868616
Unique NameFC868616
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868616_ssr552 microsatellite FC868616_ssr552:552..563. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14471 contig Ccv1_Contig14471:13..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868616 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.100e-65
Identity = 128/208 (61.54%), Postives = 160/208 (76.92%), Query Frame = 1
Query:   37 SNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVA-SFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQS-PQLLIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKKR-SIC*RKVWV**RFYYKEE 651
            +NKQVI  D+V+GFPKESD    T ++ L+VPEGSK ++L+KNLYLSCDPYMR RM K D  S +A ++ PG+P+ GYGVS+V++S HP+YKK DL+WG+  WEE S+I     +  KI  T+VPLSYYTG+LGMPG+TAY G YE+ SPKKGE VYVSAASGAVGQLVGQFAK++GC+VVGSAGSK++  +   K      F YKEE
Sbjct:    3 TNKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSK-SVLVKNLYLSCDPYMRSRMGKPDPSSALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEE 209          
BLAST of FC868616 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 8.716e-63
Identity = 125/210 (59.52%), Postives = 159/210 (75.71%), Query Frame = 1
Query:   37 SNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVA---SFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQS-PQLLIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKKR-SIC*RKVWV**RFYYKEE 651
            +NKQVIL DYV+GFP ESD    T ++ L+VPEG+ +++L+KNLYLSCDPYMR RM K D PS  A   ++ PG+P+ GYGVS++++S HP+YKK DL+WG+ +WEE S+I        KI  T+VPLSYYTG+LGMPG+TAY G YE+ SPK+GE VYVSAASGAVGQLVGQ AK++GC+VVGSAGSK++  +   K      F YKEE
Sbjct:    4 TNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGT-NSVLVKNLYLSCDPYMRIRMGKPD-PSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEE 211          
BLAST of FC868616 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.149e-30
Identity = 85/188 (45.21%), Postives = 111/188 (59.04%), Query Frame = 1
Query:   37 SNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVL-DSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKKR 597
            S +Q+ L+    G P   D +  T    + VPE  +  +L+K LY+S DPYMRGRM   D  S+V  F   + LSG  +++V+ D  H   KK D+V G  SW+E S + S   L KI  +  P S Y GILGM GLTAY GL ++  PK+GE V VS A+GAVG  VGQ AK+ G  VVG AGS ++
Sbjct:    4 SQQQIQLARRPQGIPVHEDFRFET----IPVPEPKQGEVLVKTLYVSVDPYMRGRMQ--DTKSYVEPFALDKALSGGVIAEVVSDGNH--LKKGDIVIGNLSWQEFSAV-SESALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEK 182          
BLAST of FC868616 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.659e-29
Identity = 75/192 (39.06%), Postives = 111/192 (57.81%), Query Frame = 1
Query:   22 GEEAVSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKKR 597
            G++   N++ +L+    G P   + ++        V    +  +LL+ +YLS DPYMRGRMS  D+PS+      G  + G  VS+V++S HP+Y+  D V G + W++   I S   L+K+ D     S+  G+LGMPG TAY GL ++  PK+GE + V+AA+G VG  VGQ  KL GC VVG AG  ++
Sbjct:    2 GQQKQRNRRWVLASRPHGAPVPENFRLEEDD----VATPGEGQVLLRTVYLSLDPYMRGRMS--DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYD-ISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEK 186          
BLAST of FC868616 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.028e-27
Identity = 81/201 (40.30%), Postives = 113/201 (56.22%), Query Frame = 1
Query:   34 VSNKQVILSDYV---TGFPKESD-MKIITGSINLKVPEGSKDT-LLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILDTN----VPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGS-KKRSIC 606
            VSN  VI+  Y+    G+P   + +       +L+  +  ++T +LLKN+Y S DPY+R RM      S++   + G+P     V+KV+ ST   YK    V  ++ WEE + + S Q L  +   N    +PL  + G LGMP  TAY GL  +  PK GE +Y+SAASGAVGQ+ GQ AK +G HVVGS GS +K  IC
Sbjct:    2 VSNNAVIIKKYLDSTAGYPVIGEHLAFEKREFDLENAQVDEETPVLLKNIYTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFV-SKQALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKIC 201          
BLAST of FC868616 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25
Identity = 75/206 (36.41%), Postives = 113/206 (54.85%), Query Frame = 1
Query:   34 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQL--LIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKKRSIC*RKVWV**RFYYK 645
            V  K   L  +  G P +SD ++ T    +++P  +   +LL+ L+LS DPYMR    +L         K G+ + G  V++V++S +P +    LV   + W   S+    QL  L+      +PLS   G +GMPG+TAY GL E+   K G+ V V+AA+GAVG +VGQ AK+ GC VVG+AGS+++    +K+     F YK
Sbjct:    2 VRAKNWTLKKHFHGHPTDSDFELKT----VELPPLNNGEVLLEALFLSVDPYMRLGSKRL---------KEGDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHSISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKVDYLKKIGFDFAFNYK 194          
BLAST of FC868616 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.230e-24
Identity = 75/206 (36.41%), Postives = 109/206 (52.91%), Query Frame = 1
Query:   34 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQL--LIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKKRSIC*RKVWV**RFYYK 645
            V  K   L  +  G+P  S+ ++ T    +++P      +LL+ L+L+ DPYMR    KL         K G+ + G  V++V++S +  +    +V  L  W   S+     L  L+      +PLS   G +GMPGLTAY GL ++   K GE V V+AA+GAVG +VGQ AKL GC VVG+AGS ++  C +K      F YK
Sbjct:    2 VRAKSWTLKKHFVGYPTPSNFELKT----VELPPLKNGEVLLEALFLTVDPYMRIAARKL---------KEGDMMMGEQVARVIESKNAAFPTGTIVVALLGWTTHSISDGKNLERLLAEWPDTLPLSLTLGTVGMPGLTAYFGLLDICGLKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVACLKKYGFDVAFNYK 194          
BLAST of FC868616 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.607e-24
Identity = 76/206 (36.89%), Postives = 110/206 (53.40%), Query Frame = 1
Query:   34 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILD--TNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKKRSIC*RKVWV**RFYYK 645
            V  K   L  +  GFP + + ++ T     ++P  +   +LL+ L+LS DPYMR    KL         K G+ + G  V++V++S +  + K  +V  L  W   S+     L    ++    +PLS   G +GMPGLTAY GL ++   K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS ++    +K+     F YK
Sbjct:    2 VQAKSWTLKKHFEGFPTDGNFELKT----TELPPLNNGEVLLEALFLSVDPYMRVAAKKL---------KEGDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHSISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLKKLGFDVAFNYK 194          
BLAST of FC868616 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 75/192 (39.06%), Postives = 107/192 (55.73%), Query Frame = 1
Query:   34 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKIL----DTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKKR 597
            V  K   L  +  G+P  SD ++ T    +++P      +LL+ LYL+ DPYMR             S K G+ + G  V++V++S +  +    +V   + W   S I + + L K+L    DT +PLS   G +GMPGLTAY GL ++   K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS ++
Sbjct:    2 VHAKSWTLKKHFVGYPTNSDFELKT----VELPPLKDGEVLLEALYLTVDPYMR---------IMAKSLKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHS-ISNGEKLEKVLAEWPDT-LPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEK 178          
BLAST of FC868616 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.675e-24
Identity = 71/190 (37.37%), Postives = 99/190 (52.11%), Query Frame = 1
Query:   34 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQL--LIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKKR 597
            V  K   L  +  G+P  SD ++ T  +    P      +LL+ L+L+ DPYMR    +L         K G+ + G  V+KV++S +    K  +V     W   S+     L  L+      +PLS   G +GMPGLTAY GL E+   K GE V V+AA+GAVG +VGQ AKL GC VVG+ GS ++
Sbjct:    2 VRTKTWTLKKHFVGYPTNSDFELKTAEL----PPLKNGEVLLEALFLTVDPYMRVAAKRL---------KEGDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEK 178          
The following BLAST results are available for this feature:
BLAST of FC868616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
P2_ARATH1.100e-6561.54Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH8.716e-6359.52Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YFMJ_BACSU1.149e-3045.21Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
YNCB_ECOLI1.659e-2939.06Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
YKM8_SCHPO2.028e-2740.30Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
PTGR1_RABIT1.898e-2536.41Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
PTGR1_PIG1.230e-2436.41Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]
PTGR1_MOUSE1.607e-2436.89Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_BOVIN3.580e-2439.06Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_HUMAN4.675e-2437.37Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]

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Properties
Property NameValue
Genbank descriptionC31002F11EF AbioticL1 Citrus clementina cDNA clone C31002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868616 ID=FC868616; Name=FC868616; organism=Citrus clementina; type=EST; length=670bp
AAATCTACATTCAAAATGGCGGGTGAAGAAGCAGTGAGCAACAAGCAGGT
GATTCTGAGCGACTACGTGACCGGGTTTCCAAAAGAATCAGACATGAAGA
TAATAACAGGCTCAATAAACCTGAAGGTGCCAGAGGGCTCAAAAGACACA
TTGCTTTTGAAGAATCTTTATCTTTCCTGTGATCCTTACATGAGAGGACG
TATGAGCAAGCTTGATAAGCCTTCGTTTGTTGCCTCCTTCAAGCCTGGCG
AGCCTTTGAGCGGATATGGAGTGTCCAAAGTGTTGGATTCCACACATCCA
AATTATAAGAAAGATGACTTGGTCTGGGGCTTAACCAGTTGGGAGGAGTG
CAGTCTCATCCAATCACCACAACTTCTGATTAAAATTCTGGATACAAATG
TGCCTCTGTCATACTATACTGGGATTCTTGGTATGCCTGGTTTGACTGCA
TATGGTGGTTTATATGAGCTTTCCTCTCCTAAGAAAGGAGAGTATGTCTA
TGTATCTGCAGCATCTGGAGCTGTTGGCCAGCTTGTTGGGCAATTTGCGA
AGTTGGTTGGTTGCCATGTTGTTGGAAGTGCCGGAAGCAAAAAAAGGTCG
ATCTGTTGAAGAAAAGTTTGGGTTTGATGACGCTTTTACTATAAGGAAGA
ACAGACTTAGATGCAGCTCT
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