FC868618

Overview
NameFC868618
Unique NameFC868618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:38..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: BAS1_ORYSJ (2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS1 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.094e-60
Identity = 112/121 (92.56%), Postives = 116/121 (95.87%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            PLVGN APDF AEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRY EFEKLNTEILGVS DSVFSHLAWV TDRKSGGLGDLKYPLI+D+TKSISKS+G+LIPDQGIA
Sbjct:   68 PLVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNTEILGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIA 188          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: BAS1_WHEAT (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Triticum aestivum GN=TSA PE=1 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 2.064e-59
Identity = 109/121 (90.08%), Postives = 117/121 (96.69%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            PLVGN APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR+ EFEK+NTEILGVS DSVFSHLAWV T+RKSGGLGDLKYPL++D+TKSISKS+G+LIPDQGIA
Sbjct:   18 PLVGNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSDVTKSISKSFGVLIPDQGIA 138          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: BAS1_HORVU (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Hordeum vulgare GN=BAS1 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.064e-59
Identity = 109/121 (90.08%), Postives = 117/121 (96.69%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            PLVGN APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR+ EFEK+NTEILGVS DSVFSHLAWV T+RKSGGLGDLKYPL++D+TKSISKS+G+LIPDQGIA
Sbjct:   18 PLVGNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSDVTKSISKSFGVLIPDQGIA 138          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: BAS1B_ARATH (2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.282e-58
Identity = 108/121 (89.26%), Postives = 114/121 (94.21%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            PLVGN APDF AEAVFDQEFI VKLS+YIGKKYVILFFYPLDFTFVCPTEITAFSDRY EFEKLNTE+LGVS DSVFSHLAWV TDRKSGGLGDL YPL++DITKSISKS+G+LIPDQGIA
Sbjct:   78 PLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRYEEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDITKSISKSFGVLIPDQGIA 198          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: BAS1_SPIOL (2-Cys peroxiredoxin BAS1, chloroplastic OS=Spinacia oleracea GN=BAS1 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.932e-57
Identity = 107/121 (88.43%), Postives = 114/121 (94.21%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            PLVGN APDF AEAVFDQEFI VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR++EFEKLNTE+LGVS DSVFSHLAWV TDRKSGGLGDL YPLI+D+TKSISKS+G+LI DQGIA
Sbjct:   73 PLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQGIA 193          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: BAS1A_ARATH (2-Cys peroxiredoxin BAS1, chloroplastic OS=Arabidopsis thaliana GN=BAS1 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.932e-57
Identity = 107/121 (88.43%), Postives = 114/121 (94.21%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            PLVGN APDF AEAVFDQEFI VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR++EFEKLNTE+LGVS DSVFSHLAWV TDRKSGGLGDL YPLI+D+TKSISKS+G+LI DQGIA
Sbjct:   73 PLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQGIA 193          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: YCF42_PORPU (Putative peroxiredoxin ycf42 OS=Porphyra purpurea GN=ycf42 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.324e-41
Identity = 79/112 (70.54%), Postives = 96/112 (85.71%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGIL 658
            VG  APDF+A AV+DQEF  +KLSD+   KYVILFFYPLDFTFVCPTEITAFSD+Y++F +LNTEILGVS DS +SHLAW+ TDR+SGGLGDL+YPL++D+ K IS +Y +L
Sbjct:   10 VGQIAPDFSATAVYDQEFKTIKLSDF-KNKYVILFFYPLDFTFVCPTEITAFSDKYSDFSELNTEILGVSVDSEYSHLAWLQTDRESGGLGDLEYPLVSDLKKEISIAYNVL 120          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: YCF42_PORYE (Putative peroxiredoxin ycf42 OS=Porphyra yezoensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.661e-40
Identity = 79/119 (66.39%), Postives = 97/119 (81.51%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            VG  APDF+A AV+DQEF  +KLSD +  KY++LFFYPLDFTFVCPTEITAFSD+Y  F +LNTE+LGVS DS +SHLAW+ TDR+SGGLGDL YPL++D+ K IS +Y +L  D G+A
Sbjct:   10 VGQLAPDFSATAVYDQEFKTLKLSD-LKNKYIVLFFYPLDFTFVCPTEITAFSDKYNAFSELNTEVLGVSVDSEYSHLAWLQTDRESGGLGDLSYPLVSDLKKEISAAYNVLNSD-GVA 126          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: Y755_SYNY3 (Putative peroxiredoxin sll0755 OS=Synechocystis sp. (strain PCC 6803) GN=sll0755 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.391e-39
Identity = 75/119 (63.03%), Postives = 95/119 (79.83%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            VG  APDF A A+ DQ F  VKLS Y GK Y++LFFYPLDFTFVCPTEI AFSDR++EF  L+TE++G+S DS FSHLAW+ T+RK GG+G++ YPL++D+ K IS++Y +L PD GIA
Sbjct:    7 VGQPAPDFTATAIVDQSFQTVKLSTYRGK-YLVLFFYPLDFTFVCPTEIIAFSDRHSEFTALDTEVVGISVDSEFSHLAWIQTERKMGGIGNINYPLVSDLKKEISQAYNVLEPDAGIA 124          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX2_BOVIN (Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.817e-39
Identity = 80/119 (67.23%), Postives = 91/119 (76.47%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            VG  AP+F A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFSDR AEF KLN E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD+T+ +S  YG+L  D+GIA
Sbjct:    9 VGKPAPEFQATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIVAFSDRAAEFHKLNCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRKLSSDYGVLKEDEGIA 126          
The following BLAST results are available for this feature:
BLAST of FC868618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
BAS1_ORYSJ7.094e-6092.562-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza s... [more]
BAS1_WHEAT2.064e-5990.082-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1_HORVU2.064e-5990.082-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1B_ARATH2.282e-5889.262-Cys peroxiredoxin BAS1-like, chloroplastic OS=Ar... [more]
BAS1_SPIOL1.932e-5788.432-Cys peroxiredoxin BAS1, chloroplastic OS=Spinaci... [more]
BAS1A_ARATH1.932e-5788.432-Cys peroxiredoxin BAS1, chloroplastic OS=Arabido... [more]
YCF42_PORPU4.324e-4170.54Putative peroxiredoxin ycf42 OS=Porphyra purpurea ... [more]
YCF42_PORYE3.661e-4066.39Putative peroxiredoxin ycf42 OS=Porphyra yezoensis... [more]
Y755_SYNY31.391e-3963.03Putative peroxiredoxin sll0755 OS=Synechocystis sp... [more]
PRDX2_BOVIN1.817e-3967.23Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31002G01EF AbioticL1 Citrus clementina cDNA clone C31002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868618 ID=FC868618; Name=FC868618; organism=Citrus clementina; type=EST; length=679bp
GGATGATTTTGAGCAACAGATATCCACACTTTGTTTTCGCCCCGTTCGTT
GACTCCAGCTGAACAAGAATACAACAACAAAAACAATGGCTTGCTCAGCT
GCTTCTGCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAA
GGCTTTCTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCC
GCTCCTTCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCC
GTTTCTCTTTCCCGCAGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGC
ATCCGTTGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTG
CAGAGGCTGTTTTCGATCAAGAGTTTATCAATGTCAAGCTTTCGGATTAC
ATTGGGAAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATT
TGTTTGCCCCACAGAAATCACTGCTTTCAGTGACCGATATGCTGAATTTG
AGAAGCTAAACACAGAGATATTGGGTGTCTCAACTGACAGTGTGTTTTCA
CACTTGGCATGGGTCCCAACAGACAGAAAGTCAGGTGGTCTTGGTGATTT
GAAGTACCCACTAATTGCTGATATCACCAAATCAATTTCAAAATCCTATG
GTATTCTGATCCCTGATCAGGGAATTGCA
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