FC868620

Overview
NameFC868620
Unique NameFC868620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2766 contig Ccv1_Contig2766:2..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3L_ORYSJ (tRNA-dihydrouridine synthase 3-like OS=Oryza sativa subsp. japonica GN=Os04g0117600 PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 4.710e-50
Identity = 102/184 (55.43%), Postives = 123/184 (66.85%), Query Frame = 2
Query:   65 PADSPPPQPNSTGVPVHNLMPEELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERHQEKKSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNK 616
            PAD P   P ++  P  +  PEELVA+A+APVK  FLRPP +     D  K             +V EKKSKRQLKRER QE+KS+SHLC EV KSG+VSSC Y D CRFSHD+D + AQKP DLEG CPF + +  CPYGL CRF GTH+D+   +G+   L +  E+N LNKD+QKLLWKNK
Sbjct:   13 PADPPDSSPAASSPPRPS--PEELVARAVAPVKPAFLRPPLSATPPKDEGKANG-------GGAVVAEKKSKRQLKRERKQEQKSSSHLCIEVGKSGNVSSCKYGDSCRFSHDIDAYLAQKPADLEGTCPFTNLDQLCPYGLTCRFLGTHKDIHAASGN---LSEKHEINALNKDIQKLLWKNK 184          
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3L_ARATH (tRNA-dihydrouridine synthase 3-like OS=Arabidopsis thaliana GN=At4g38890 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.721e-42
Identity = 87/185 (47.03%), Postives = 125/185 (67.57%), Query Frame = 2
Query:   83 PQPNSTGVPVHNLMPEELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERHQEK-------KSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNK 616
            P  ++    V+    EEL+ +++AP+KK+FL PPP     + +VK  +    +   S LV+EKKSKRQLKRER +         +S  +LCP+VA++ DV SC YKDKCRF+HD++ FKAQK DD+EG+CPF++S   C YGL+CRF G+HR   D+ G+++  ++ SE+N  NK+ Q+LLWKNK
Sbjct:   23 PVQSTKQFSVYEATSEELIERSMAPIKKEFLCPPPP----SRSVKQNDAADVRAPQSGLVQEKKSKRQLKRERREVLIRITSVLQSTINLCPQVARTEDVDSCQYKDKCRFNHDIEAFKAQKADDIEGQCPFVASGMKCAYGLSCRFLGSHR---DITGNSDD-KEKSEMNFFNKETQRLLWKNK 199          
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3_YARLI (tRNA-dihydrouridine synthase 3 OS=Yarrowia lipolytica GN=DUS3 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.164e-14
Identity = 47/140 (33.57%), Postives = 66/140 (47.14%), Query Frame = 2
Query:  110 VHNLMPEELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERHQEKKSASHLCP---EVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRD 520
            V ++ PE LVA+A A  +      PP+    ND +    E+          +EKK   Q K    +++K A  +C    +  + G    C Y DKC+F HDL  +   KP D+EG CP     G CP G  CR+  +HRD
Sbjct:   36 VASIKPEYLVARASADARDA----PPS---VNDDLAEGGEKP---------EEKKKGGQNKNRSLKQRKDAIKMCSSALQFKEDGSPQECSYGDKCKFEHDLQKYLESKPKDIEGVCPVFDLTGQCPQGYKCRWLSSHRD 159          
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3_ASPCL (tRNA-dihydrouridine synthase 3 OS=Aspergillus clavatus GN=dus3 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.439e-14
Identity = 56/163 (34.36%), Postives = 72/163 (44.17%), Query Frame = 2
Query:   71 DSPPPQPNSTGVPVHNLMPEELV---AKAIAPVKKQFL-----RPPPTRA-NQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERHQEKKSASHLCPEVAKSGDVS--SCPYKDKCRFSHDLDGF-KAQKPDDLE---GECPFLSSEGPCPYGLACRFSGTH 514
            + P  +P     PV      +      K IAPVK +F+     RP P  A N  D        S QQ  S    +KK+  Q K     +   A  LCP  A S + S   C + D+CRF HD+  + K  K  DL    G CP   ++G CPYG  CRF G+H
Sbjct:   35 EHPAKKPRLENAPVTEKEEADAAPKRVKGIAPVKAEFIVQKSARPQPVEADNTVDADDAAEAASHQQRESEQKGKKKTSGQNKGRDFGQHNDAKGLCPSRAFSPEFSPKECKFGDRCRFEHDVRTYLKEHKRADLTTFGGICPLWEAKGRCPYGYKCRFVGSH 197          
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3_CANAL (tRNA-dihydrouridine synthase 3 OS=Candida albicans GN=DUS3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.854e-13
Identity = 50/173 (28.90%), Postives = 81/173 (46.82%), Query Frame = 2
Query:  143 KAIAPVKKQFLRPPPTRANQNDTVKYTNERSS---QQHSSTLVKEKKSKRQLKRERHQEKKSASHLCPEVAKSGDVSSCPY-KDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTH-----------RDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNK 616
            K +A +K ++L P  +       V+Y ++ +    ++  S    +KK K Q  +   ++KK    LCP +    D   C    DKCRF HD+  +   KP D++G CP   + G CP G+ CR+  +H            D ++ A +TN      EVN ++KD +  + K K
Sbjct:   28 KGVAAIKAEYLVPTSSLT----VVEYDDDEAEGGDREGESKPRNKKKQKGQNHKRDLKQKKDIIKLCPSLIDPEDDRICQVGADKCRFHHDIASYLESKPQDIDGICPVFEALGYCPTGIKCRWLKSHYNPETSKLIKDGDKMETAKTTN-----YEVNHIDKDQKMEMQKKK 191          
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3_DEBHA (tRNA-dihydrouridine synthase 3 OS=Debaryomyces hansenii GN=DUS3 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12
Identity = 53/200 (26.50%), Postives = 92/200 (46.00%), Query Frame = 2
Query:   62 LPADSPPPQPNSTGVPVHNLMPE-ELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQ------QHSSTLVKEKKSKRQLKRERHQEKKSASHLCPEVAKSGDVSSCPY-KDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRF------SGTHRDVVDVAGSTNTLRKSS-EVNGLNKDVQKLLWKNK 616
            +P   P  QP+       ++ P  +  AK IAP+K +F+   P    +    KY N+  ++      +      K KK + Q K+   +++     LC  +    +   C +  + CR SH+++ + + KP+D+EG CP  ++ G CP GL CR+        TH+ + D+    N    ++ EVN +  D +  L K K
Sbjct:    4 IPEKRPSEQPDEAEAKKPHIEPRHDHFAKGIAPIKAEFIVENPDVPVEE---KYINDDEAEGGDRQEEEGGKGGKNKKRRGQNKKRDLKQQHEEVRLCSSLLDPENPKECRFGAENCRNSHNVEEYISSKPEDIEGNCPVYTAIGYCPAGLKCRWLHSHYNKETHKLLKDLEQVENAKALNNYEVNKITPDKKTSLQKKK 200          
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3_SCHPO (tRNA-dihydrouridine synthase 3 OS=Schizosaccharomyces pombe GN=dus3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.750e-12
Identity = 41/129 (31.78%), Postives = 66/129 (51.16%), Query Frame = 2
Query:  257 LVKEKKSKRQLKRERHQEK-------KSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSS------EVNGLNKDVQKLL 604
            LVK+  +K++ ++ER Q K       K  + LCP ++   +   CPYK+ C+F HD++ + A K  D+  +CP     G CP G  CR+   H  V++  G    ++K         VN + K+VQ+ L
Sbjct:   16 LVKQDGNKKRKRKERGQNKRREKIHVKENNALCPAISIGNE---CPYKENCKFPHDVEAYLATKAPDIGDKCPIFERYGVCPAGFKCRWLAGH-VVINADGKYELIKKPDGQFTLFTVNTVGKEVQRKL 140          
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3_YEAST (tRNA-dihydrouridine synthase 3 OS=Saccharomyces cerevisiae GN=DUS3 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.091e-12
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 2
Query:  140 AKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHSSTLV--KEKKSKRQLKRERHQEK-------KSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEG----ECPFLSSEGPCPYGLACRFSGTHRDVVD 529
            +K IA +K +++ P     NQ   + Y  E SS + ++       KK+K    ++R Q K       K  + LCP +   GD+S C + D CRF HD++ + + K  ++E      CP  +S G CP G  CRF  +H +  D
Sbjct:   26 SKGIAHIKPEYIVPLKQNENQKVAI-YDEEMSSDRMTNEFAGGTNKKNKNGRGKKRGQNKNRDNRQVKEQNVLCPRLIH-GDISKCSFGDNCRFVHDINLYLSTKKPEVESNIFPSCPVFNSLGFCPMGFKCRFLSSHLNKED 166          
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3_YEAS7 (tRNA-dihydrouridine synthase 3 OS=Saccharomyces cerevisiae (strain YJM789) GN=DUS3 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.091e-12
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 2
Query:  140 AKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHSSTLV--KEKKSKRQLKRERHQEK-------KSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEG----ECPFLSSEGPCPYGLACRFSGTHRDVVD 529
            +K IA +K +++ P     NQ   + Y  E SS + ++       KK+K    ++R Q K       K  + LCP +   GD+S C + D CRF HD++ + + K  ++E      CP  +S G CP G  CRF  +H +  D
Sbjct:   26 SKGIAHIKPEYIVPLKQNENQKVAI-YDEEMSSDRMTNEFAGGTNKKNKNGRGKKRGQNKNRDNRQVKEQNVLCPRLIH-GDISKCSFGDNCRFVHDINLYLSTKKPEVESNIFPSCPVFNSLGFCPMGFKCRFLSSHLNKED 166          
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3L_RAT (tRNA-dihydrouridine synthase 3-like OS=Rattus norvegicus GN=Dus3l PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.683e-12
Identity = 43/159 (27.04%), Postives = 70/159 (44.03%), Query Frame = 2
Query:  185 PTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERHQEKKSASH----------LCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTH-----RDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNK 616
            PT        K       Q++  T V  +  +RQ+ +    + KS  H          LCP + +    + C + D+CRF HD+  +   KP DL   C   ++ G CPY + CRF+G H     +++V         +  S  NGL++ +Q+ L K +
Sbjct:   57 PTEGPAEPEAKRIRLEDGQENGKTEVAVESHERQVPKRARGQNKSRPHMKPAHYDKERLCPSLLQES-ATPCAFGDRCRFLHDVGRYLETKPADLGPHCVLFNTFGRCPYSMTCRFAGAHLGPEGQNLVQEEVVARCAQLPSVRNGLDRALQQQLRKRQ 214          
The following BLAST results are available for this feature:
BLAST of FC868620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
DUS3L_ORYSJ4.710e-5055.43tRNA-dihydrouridine synthase 3-like OS=Oryza sativ... [more]
DUS3L_ARATH4.721e-4247.03tRNA-dihydrouridine synthase 3-like OS=Arabidopsis... [more]
DUS3_YARLI4.164e-1433.57tRNA-dihydrouridine synthase 3 OS=Yarrowia lipolyt... [more]
DUS3_ASPCL5.439e-1434.36tRNA-dihydrouridine synthase 3 OS=Aspergillus clav... [more]
DUS3_CANAL7.854e-1328.90tRNA-dihydrouridine synthase 3 OS=Candida albicans... [more]
DUS3_DEBHA1.340e-1226.50tRNA-dihydrouridine synthase 3 OS=Debaryomyces han... [more]
DUS3_SCHPO1.750e-1231.78tRNA-dihydrouridine synthase 3 OS=Schizosaccharomy... [more]
DUS3_YEAST5.091e-1231.47tRNA-dihydrouridine synthase 3 OS=Saccharomyces ce... [more]
DUS3_YEAS75.091e-1231.47tRNA-dihydrouridine synthase 3 OS=Saccharomyces ce... [more]
DUS3L_RAT8.683e-1227.04tRNA-dihydrouridine synthase 3-like OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionC31002G03EF AbioticL1 Citrus clementina cDNA clone C31002G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868620 ID=FC868620; Name=FC868620; organism=Citrus clementina; type=EST; length=649bp
CTGAGTTCTTAACCTTCGTTAAATGGCCGAGTCCGCAGCCGAACTCAGTG
AGTCCCGGGTTCTTCCGGCGGACTCACCGCCACCACAACCGAATTCAACC
GGAGTTCCGGTTCATAATCTAATGCCAGAGGAGCTCGTGGCCAAAGCCAT
AGCTCCAGTTAAGAAACAGTTCCTTCGTCCTCCGCCGACAAGAGCCAATC
AAAACGACACCGTTAAATATACCAACGAGAGGTCATCTCAGCAGCACTCG
TCGACCTTAGTCAAGGAAAAGAAATCAAAACGGCAACTCAAACGCGAACG
TCATCAGGAAAAAAAATCTGCTAGTCATCTTTGTCCTGAAGTAGCTAAGA
GTGGAGATGTTAGTTCGTGCCCTTATAAAGATAAGTGCCGATTCAGCCAT
GACTTAGATGGCTTCAAGGCTCAGAAACCGGATGATCTAGAAGGTGAATG
CCCGTTTTTGAGTTCTGAAGGGCCGTGTCCTTATGGTTTGGCCTGCAGAT
TTTCGGGTACTCATAGAGATGTTGTTGATGTTGCTGGTTCTACAAACACG
CTGCGGAAAAGCTCTGAGGTGAATGGTTTGAACAAAGATGTGCAGAAACT
TTTGTGGAAGAATAAATGAAATTCCCAAAGCTGATGCAAACTNCAATCT
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