FC868620
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3L_ORYSJ (tRNA-dihydrouridine synthase 3-like OS=Oryza sativa subsp. japonica GN=Os04g0117600 PE=2 SV=2) HSP 1 Score: 197.593 bits (501), Expect = 4.710e-50 Identity = 102/184 (55.43%), Postives = 123/184 (66.85%), Query Frame = 2 Query: 65 PADSPPPQPNSTGVPVHNLMPEELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERHQEKKSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNK 616 PAD P P ++ P + PEELVA+A+APVK FLRPP + D K +V EKKSKRQLKRER QE+KS+SHLC EV KSG+VSSC Y D CRFSHD+D + AQKP DLEG CPF + + CPYGL CRF GTH+D+ +G+ L + E+N LNKD+QKLLWKNK Sbjct: 13 PADPPDSSPAASSPPRPS--PEELVARAVAPVKPAFLRPPLSATPPKDEGKANG-------GGAVVAEKKSKRQLKRERKQEQKSSSHLCIEVGKSGNVSSCKYGDSCRFSHDIDAYLAQKPADLEGTCPFTNLDQLCPYGLTCRFLGTHKDIHAASGN---LSEKHEINALNKDIQKLLWKNK 184
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3L_ARATH (tRNA-dihydrouridine synthase 3-like OS=Arabidopsis thaliana GN=At4g38890 PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 4.721e-42 Identity = 87/185 (47.03%), Postives = 125/185 (67.57%), Query Frame = 2 Query: 83 PQPNSTGVPVHNLMPEELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERHQEK-------KSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNK 616 P ++ V+ EEL+ +++AP+KK+FL PPP + +VK + + S LV+EKKSKRQLKRER + +S +LCP+VA++ DV SC YKDKCRF+HD++ FKAQK DD+EG+CPF++S C YGL+CRF G+HR D+ G+++ ++ SE+N NK+ Q+LLWKNK Sbjct: 23 PVQSTKQFSVYEATSEELIERSMAPIKKEFLCPPPP----SRSVKQNDAADVRAPQSGLVQEKKSKRQLKRERREVLIRITSVLQSTINLCPQVARTEDVDSCQYKDKCRFNHDIEAFKAQKADDIEGQCPFVASGMKCAYGLSCRFLGSHR---DITGNSDD-KEKSEMNFFNKETQRLLWKNK 199
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3_YARLI (tRNA-dihydrouridine synthase 3 OS=Yarrowia lipolytica GN=DUS3 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.164e-14 Identity = 47/140 (33.57%), Postives = 66/140 (47.14%), Query Frame = 2 Query: 110 VHNLMPEELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERHQEKKSASHLCP---EVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRD 520 V ++ PE LVA+A A + PP+ ND + E+ +EKK Q K +++K A +C + + G C Y DKC+F HDL + KP D+EG CP G CP G CR+ +HRD Sbjct: 36 VASIKPEYLVARASADARDA----PPS---VNDDLAEGGEKP---------EEKKKGGQNKNRSLKQRKDAIKMCSSALQFKEDGSPQECSYGDKCKFEHDLQKYLESKPKDIEGVCPVFDLTGQCPQGYKCRWLSSHRD 159
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3_ASPCL (tRNA-dihydrouridine synthase 3 OS=Aspergillus clavatus GN=dus3 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.439e-14 Identity = 56/163 (34.36%), Postives = 72/163 (44.17%), Query Frame = 2 Query: 71 DSPPPQPNSTGVPVHNLMPEELV---AKAIAPVKKQFL-----RPPPTRA-NQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERHQEKKSASHLCPEVAKSGDVS--SCPYKDKCRFSHDLDGF-KAQKPDDLE---GECPFLSSEGPCPYGLACRFSGTH 514 + P +P PV + K IAPVK +F+ RP P A N D S QQ S +KK+ Q K + A LCP A S + S C + D+CRF HD+ + K K DL G CP ++G CPYG CRF G+H Sbjct: 35 EHPAKKPRLENAPVTEKEEADAAPKRVKGIAPVKAEFIVQKSARPQPVEADNTVDADDAAEAASHQQRESEQKGKKKTSGQNKGRDFGQHNDAKGLCPSRAFSPEFSPKECKFGDRCRFEHDVRTYLKEHKRADLTTFGGICPLWEAKGRCPYGYKCRFVGSH 197
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3_CANAL (tRNA-dihydrouridine synthase 3 OS=Candida albicans GN=DUS3 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.854e-13 Identity = 50/173 (28.90%), Postives = 81/173 (46.82%), Query Frame = 2 Query: 143 KAIAPVKKQFLRPPPTRANQNDTVKYTNERSS---QQHSSTLVKEKKSKRQLKRERHQEKKSASHLCPEVAKSGDVSSCPY-KDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTH-----------RDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNK 616 K +A +K ++L P + V+Y ++ + ++ S +KK K Q + ++KK LCP + D C DKCRF HD+ + KP D++G CP + G CP G+ CR+ +H D ++ A +TN EVN ++KD + + K K Sbjct: 28 KGVAAIKAEYLVPTSSLT----VVEYDDDEAEGGDREGESKPRNKKKQKGQNHKRDLKQKKDIIKLCPSLIDPEDDRICQVGADKCRFHHDIASYLESKPQDIDGICPVFEALGYCPTGIKCRWLKSHYNPETSKLIKDGDKMETAKTTN-----YEVNHIDKDQKMEMQKKK 191
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3_DEBHA (tRNA-dihydrouridine synthase 3 OS=Debaryomyces hansenii GN=DUS3 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12 Identity = 53/200 (26.50%), Postives = 92/200 (46.00%), Query Frame = 2 Query: 62 LPADSPPPQPNSTGVPVHNLMPE-ELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQ------QHSSTLVKEKKSKRQLKRERHQEKKSASHLCPEVAKSGDVSSCPY-KDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRF------SGTHRDVVDVAGSTNTLRKSS-EVNGLNKDVQKLLWKNK 616 +P P QP+ ++ P + AK IAP+K +F+ P + KY N+ ++ + K KK + Q K+ +++ LC + + C + + CR SH+++ + + KP+D+EG CP ++ G CP GL CR+ TH+ + D+ N ++ EVN + D + L K K Sbjct: 4 IPEKRPSEQPDEAEAKKPHIEPRHDHFAKGIAPIKAEFIVENPDVPVEE---KYINDDEAEGGDRQEEEGGKGGKNKKRRGQNKKRDLKQQHEEVRLCSSLLDPENPKECRFGAENCRNSHNVEEYISSKPEDIEGNCPVYTAIGYCPAGLKCRWLHSHYNKETHKLLKDLEQVENAKALNNYEVNKITPDKKTSLQKKK 200
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3_SCHPO (tRNA-dihydrouridine synthase 3 OS=Schizosaccharomyces pombe GN=dus3 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.750e-12 Identity = 41/129 (31.78%), Postives = 66/129 (51.16%), Query Frame = 2 Query: 257 LVKEKKSKRQLKRERHQEK-------KSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSS------EVNGLNKDVQKLL 604 LVK+ +K++ ++ER Q K K + LCP ++ + CPYK+ C+F HD++ + A K D+ +CP G CP G CR+ H V++ G ++K VN + K+VQ+ L Sbjct: 16 LVKQDGNKKRKRKERGQNKRREKIHVKENNALCPAISIGNE---CPYKENCKFPHDVEAYLATKAPDIGDKCPIFERYGVCPAGFKCRWLAGH-VVINADGKYELIKKPDGQFTLFTVNTVGKEVQRKL 140
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3_YEAST (tRNA-dihydrouridine synthase 3 OS=Saccharomyces cerevisiae GN=DUS3 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 5.091e-12 Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 2 Query: 140 AKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHSSTLV--KEKKSKRQLKRERHQEK-------KSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEG----ECPFLSSEGPCPYGLACRFSGTHRDVVD 529 +K IA +K +++ P NQ + Y E SS + ++ KK+K ++R Q K K + LCP + GD+S C + D CRF HD++ + + K ++E CP +S G CP G CRF +H + D Sbjct: 26 SKGIAHIKPEYIVPLKQNENQKVAI-YDEEMSSDRMTNEFAGGTNKKNKNGRGKKRGQNKNRDNRQVKEQNVLCPRLIH-GDISKCSFGDNCRFVHDINLYLSTKKPEVESNIFPSCPVFNSLGFCPMGFKCRFLSSHLNKED 166
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3_YEAS7 (tRNA-dihydrouridine synthase 3 OS=Saccharomyces cerevisiae (strain YJM789) GN=DUS3 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.091e-12 Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 2 Query: 140 AKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHSSTLV--KEKKSKRQLKRERHQEK-------KSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEG----ECPFLSSEGPCPYGLACRFSGTHRDVVD 529 +K IA +K +++ P NQ + Y E SS + ++ KK+K ++R Q K K + LCP + GD+S C + D CRF HD++ + + K ++E CP +S G CP G CRF +H + D Sbjct: 26 SKGIAHIKPEYIVPLKQNENQKVAI-YDEEMSSDRMTNEFAGGTNKKNKNGRGKKRGQNKNRDNRQVKEQNVLCPRLIH-GDISKCSFGDNCRFVHDINLYLSTKKPEVESNIFPSCPVFNSLGFCPMGFKCRFLSSHLNKED 166
BLAST of FC868620 vs. ExPASy Swiss-Prot
Match: DUS3L_RAT (tRNA-dihydrouridine synthase 3-like OS=Rattus norvegicus GN=Dus3l PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.683e-12 Identity = 43/159 (27.04%), Postives = 70/159 (44.03%), Query Frame = 2 Query: 185 PTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERHQEKKSASH----------LCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTH-----RDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNK 616 PT K Q++ T V + +RQ+ + + KS H LCP + + + C + D+CRF HD+ + KP DL C ++ G CPY + CRF+G H +++V + S NGL++ +Q+ L K + Sbjct: 57 PTEGPAEPEAKRIRLEDGQENGKTEVAVESHERQVPKRARGQNKSRPHMKPAHYDKERLCPSLLQES-ATPCAFGDRCRFLHDVGRYLETKPADLGPHCVLFNTFGRCPYSMTCRFAGAHLGPEGQNLVQEEVVARCAQLPSVRNGLDRALQQQLRKRQ 214 The following BLAST results are available for this feature:
BLAST of FC868620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868620 ID=FC868620; Name=FC868620; organism=Citrus clementina; type=EST; length=649bpback to top |