FC868622

Overview
NameFC868622
Unique NameFC868622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2430 contig Ccv1_Contig2430:202..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868622 vs. ExPASy Swiss-Prot
Match: QORL_ARATH (Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.439e-56
Identity = 110/160 (68.75%), Postives = 124/160 (77.50%), Query Frame = 3
Query:  102 TKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPXXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKASEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGK 581
            T   ++P EMKAW+Y +YGGVDVLK +  + VP++KEDQVLIKVVAAALNPVD KRRQGKFKATDSPLP                  K+ KEGDEVY +++EKA EGPKQFGSLAEYTAVEE+LLA KPKN+DF QAAGLPLAIETA EGL RT FSAGK
Sbjct:   69 TADASIPKEMKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLALKPKNIDFAQAAGLPLAIETADEGLVRTEFSAGK 228          
BLAST of FC868622 vs. ExPASy Swiss-Prot
Match: RT4I1_BOVIN (Reticulon-4-interacting protein 1, mitochondrial OS=Bos taurus GN=RTN4IP1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.102e-11
Identity = 47/162 (29.01%), Postives = 76/162 (46.91%), Query Frame = 3
Query:  129 MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQG---------------KFKATDSPLPXXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKASEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG 566
            M AW+  +YG  +VL+F + + +P +   ++V+IKV AA++NP+D   R G               K K  + PL                   + FK GDEV+      A+  P + G+L+E+  V    ++ KP++L   QAA LP    TA+  + + G
Sbjct:   43 MPAWVIDKYGSNEVLRFTQNMMIPMIHYPNEVIIKVHAASINPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDV--RYFKPGDEVW------AAVPPWKQGTLSEFVVVSGNEVSHKPRSLTHTQAASLPYVALTAWSAINKVG 196          
BLAST of FC868622 vs. ExPASy Swiss-Prot
Match: RT4I1_HUMAN (Reticulon-4-interacting protein 1, mitochondrial OS=Homo sapiens GN=RTN4IP1 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 48/162 (29.63%), Postives = 76/162 (46.91%), Query Frame = 3
Query:  129 MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQG---------------KFKATDSPLPXXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKASEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG 566
            M AW+  +YG  +VL+F + + +P +   ++V++KV AA++NP+D   R G               K K  + PL                   K FK GDEV+      A+  P + G+L+E+  V    ++ KPK+L   QAA LP    TA+  + + G
Sbjct:   43 MPAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDV--KYFKPGDEVW------AAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVG 196          
The following BLAST results are available for this feature:
BLAST of FC868622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
QORL_ARATH1.439e-5668.75Quinone oxidoreductase-like protein At1g23740, chl... [more]
RT4I1_BOVIN4.102e-1129.01Reticulon-4-interacting protein 1, mitochondrial O... [more]
RT4I1_HUMAN9.139e-1129.63Reticulon-4-interacting protein 1, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionC31002G05EF AbioticL1 Citrus clementina cDNA clone C31002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868622 ID=FC868622; Name=FC868622; organism=Citrus clementina; type=EST; length=636bp
AAAAAGTAACCACCCTTAAGCAAGGCTCATTTTCTTACCTTCCTCTTGGA
GTTCAAGCAAGTGCATCACAAGCTGCAGCATCGTCCACTGAGGCTGAGCC
CACTAAAGTGGGAACTGTTCCAAGCGAGATGAAGGCTTGGCTGTATGGGG
AATATGGGGGCGTTGATGTTTTGAAGTTCGACGAGAAAGTGACAGTGCCT
CAAGTGAAGGAGGATCAAGTGTTGATCAAAGTTGTCGCTGCTGCCCTTAA
TCCTGTTGATGGGAAGAGAAGGCAGGGCAAGTTCAAGGCCACTGATTCTC
CTCTCCCGACTGTTCCAGGCTATGATGTTACTGGTGTAGTGGTAAAGGTT
GGCACTCAAGTGAAGGAATTTAAGGAGGGGGATGAAGTATACGGGGACAT
AAATGAGAAAGCTTCGGAAGGGCCCAAACAGTTTGGCTCTTTGGCGGAGT
ACACTGCGGTTGAAGAGAGGTTACTGGCCCCAAAACCTAAGAATTTGGAC
TTTGTTCAGGCTGCTGGCCTTCCGCTCGCTATCGAGACAGCCTATGAGGG
TCTAGAAAGGACTGGTTTCTCTGCTGGTAAATCTATTCTTGTTTTGAATG
GTTCTGGTGGTGTTGGAAGCTTGGTTATTCAGCTGG
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