FC868624

Overview
NameFC868624
Unique NameFC868624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: IDND_VITVI (L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSVIVT00012394001 PE=1 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 6.779e-71
Identity = 129/169 (76.33%), Postives = 146/169 (86.39%), Query Frame = 2
Query:  179 MGKGGMSQGE---KEDGEEVNMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            MGKGG S+     KE GEE NMAAWL+G+ TLKIQP+ LPSLGPYDV VR+KAVGICGSDVH  KT+R A+F+VK+PMVIGHECAG+IE+VGSEVK LV GDRVALEPGISC RC  C+ G+YNLC EMKFF +PP +GSLANQVVHP++LCFKLPDNVSLEEGAMCEP
Sbjct:    1 MGKGGNSEDAVSGKEHGEE-NMAAWLLGIKTLKIQPYILPSLGPYDVKVRIKAVGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKNLVAGDRVALEPGISCNRCSLCRNGQYNLCREMKFFGSPPTNGSLANQVVHPSNLCFKLPDNVSLEEGAMCEP 168          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: DHSO_MOUSE (Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 4.738e-40
Identity = 78/149 (52.35%), Postives = 106/149 (71.14%), Query Frame = 2
Query:  230 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            N++  + G   ++++ + +P LGP DVL++M +VGICGSDVH+ +  R+ DFVVK+PMV+GHE AG + KVG  VK L PGDRVA+EPG+     ++CK GRYNL P + F ATPP  G+L     H AD C+KLPD+V+ EEGA+ EP
Sbjct:    9 NLSLVVHGPGDIRLENYPIPELGPNDVLLKMHSVGICGSDVHYWEHGRIGDFVVKKPMVLGHEAAGTVTKVGELVKHLKPGDRVAIEPGVPREVDEYCKIGRYNLTPTIFFCATPPDDGNLCRFYKHNADFCYKLPDSVTFEEGALIEP 157          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: DHSO_RAT (Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4)

HSP 1 Score: 164.081 bits (414), Expect = 6.189e-40
Identity = 78/149 (52.35%), Postives = 105/149 (70.47%), Query Frame = 2
Query:  230 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            N++  + G   ++++ + +P LGP DVL++M +VGICGSDVH+ +  R+ DFVVK+PMV+GHE AG + KVG  VK L PGDRVA+EPG+     + CK GRYNL P + F ATPP  G+L     H AD C+KLPD+V+ EEGA+ EP
Sbjct:    9 NLSLVVHGPGDIRLENYPIPELGPNDVLLKMHSVGICGSDVHYWEHGRIGDFVVKKPMVLGHEAAGTVTKVGPMVKHLKPGDRVAIEPGVPREIDEFCKIGRYNLTPSIFFCATPPDDGNLCRFYKHSADFCYKLPDSVTFEEGALIEP 157          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: DHSO_MACFA (Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 8.083e-40
Identity = 77/149 (51.68%), Postives = 105/149 (70.47%), Query Frame = 2
Query:  230 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            N++  + G   L+++ + +P  GP +VL+RM +VGICGSDVH+ +  R+ +F+VK+PMV+GHE +G +EKVGS VK L PGDRVA+EPG+     + CK GRYNL P + F ATPP  G+L     H A  C+KLPDNV+ EEGA+ EP
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEEGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGVPRENDEFCKSGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEP 157          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: DHSO_PONAB (Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.071e-39
Identity = 78/149 (52.35%), Postives = 104/149 (69.80%), Query Frame = 2
Query:  230 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            N++  + G   L+++ + +P  GP +VL+RM +VGICGSDVH+ +  R+ +F+VK+PMV+GHE +G +EKVGS VK L PGDRVA+EPG      + CK GRYNL P + F ATPP  G+L     H A  C+KLPDNV+ EEGAM EP
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEDGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGAPRENDEFCKIGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGAMIEP 157          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: DHSO_HUMAN (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 3.071e-39
Identity = 77/149 (51.68%), Postives = 104/149 (69.80%), Query Frame = 2
Query:  230 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            N++  + G   L+++ + +P  GP +VL+RM +VGICGSDVH+ +  R+ +F+VK+PMV+GHE +G +EKVGS VK L PGDRVA+EPG      + CK GRYNL P + F ATPP  G+L     H A  C+KLPDNV+ EEGA+ EP
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEP 157          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: DHSO_BOVIN (Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 4.435e-38
Identity = 76/149 (51.01%), Postives = 104/149 (69.80%), Query Frame = 2
Query:  230 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            N++  + G   L+++ + +P  GP +VL++M +VGICGSDVH+ +  R+ DFVVK+PMV+GHE +G + KVGS V+ L PGDRVA+EPG      + CK GRYNL P + F ATPP  G+L     H A+ C+KLPDNV+ EEGA+ EP
Sbjct:    8 NLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIEPGAPRETDEFCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEP 156          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: DHSO_SHEEP (Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.404e-37
Identity = 75/149 (50.34%), Postives = 104/149 (69.80%), Query Frame = 2
Query:  230 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            N++  + G   L+++ + +P  GP +VL++M +VGICGSDVH+ +  R+ DFVVK+PMV+GHE +G + KVGS V+ L PGDRVA++PG      + CK GRYNL P + F ATPP  G+L     H A+ C+KLPDNV+ EEGA+ EP
Sbjct:    7 NLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQG-RIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIQPGAPRQTDEFCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEP 154          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: DHSO_BACSU (Sorbitol dehydrogenase OS=Bacillus subtilis GN=gutB PE=1 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.092e-36
Identity = 68/147 (46.26%), Postives = 99/147 (67.35%), Query Frame = 2
Query:  236 AAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            AA +     +KI+   +P +   +VL+++ AVGICGSD+H+    R+ ++VV++P ++GHECAG I  VGS V     GDRVA+EPG++C RC+ CK GRYNLCP+++F ATPPV G+    +    D  F +PD++S EE A+ EP
Sbjct:   11 AAVMHNTREIKIETLPVPDINHDEVLIKVMAVGICGSDLHYYTNGRIGNYVVEKPFILGHECAGEIAAVGSSVDQFKVGDRVAVEPGVTCGRCEACKEGRYNLCPDVQFLATPPVDGAFVQYIKMRQDFVFLIPDSLSYEEAALIEP 157          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: DHSO_SCHPO (Putative sorbitol dehydrogenase OS=Schizosaccharomyces pombe GN=tms1 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.577e-35
Identity = 67/125 (53.60%), Postives = 88/125 (70.40%), Query Frame = 2
Query:  302 YDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            + V V +KA GICGSDVH+ K   + DF++K+PM++GHE AGV+ +VG  V +L PGD VA+EPG  C  CD+C+ GRYNLCP M+F ATPP  G+L    +   D C KLP  +S+EEGA+ EP
Sbjct:   30 HQVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPGDPVAVEPGCVCRLCDYCRSGRYNLCPHMEFAATPPYDGTLRTYYITTEDFCTKLPKQISVEEGALFEP 154          
The following BLAST results are available for this feature:
BLAST of FC868624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
IDND_VITVI6.779e-7176.33L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSV... [more]
DHSO_MOUSE4.738e-4052.35Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=... [more]
DHSO_RAT6.189e-4052.35Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sor... [more]
DHSO_MACFA8.083e-4051.68Sorbitol dehydrogenase OS=Macaca fascicularis GN=S... [more]
DHSO_PONAB3.071e-3952.35Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=... [more]
DHSO_HUMAN3.071e-3951.68Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=... [more]
DHSO_BOVIN4.435e-3851.01Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 ... [more]
DHSO_SHEEP6.404e-3750.34Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 ... [more]
DHSO_BACSU1.092e-3646.26Sorbitol dehydrogenase OS=Bacillus subtilis GN=gut... [more]
DHSO_SCHPO1.577e-3553.60Putative sorbitol dehydrogenase OS=Schizosaccharom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31002G07EF AbioticL1 Citrus clementina cDNA clone C31002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868624 ID=FC868624; Name=FC868624; organism=Citrus clementina; type=EST; length=676bp
TATGCCGGGGAGAAACAATAATCTACACGGTCAAATAAAAAGAACACTTG
ATGTTATGCTAAACTTGTCATTAAATATTCCTGCGACCGAATCAAATCAT
ATCCAATATCCAGAATCAGATAGTGTACAGAGTGAAGTCTCTGCTGTGCA
CTTGTGTTTTGAAGGGTGAAAAGCAAATATGGGCAAAGGAGGGATGTCGC
AAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATG
GGTGTCAACACCCTCAAGATTCAGCCTTTTGAGCTTCCTTCTCTGGGACC
ATATGATGTTTTAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATG
TGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGCCT
ATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGA
GGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGATCA
GCTGCTGGCGATGTGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCA
GAGATGAAATTTTTTGCAACTCCGCCAGTTCATGGTTCTCTGGCTAATCA
GGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCC
TGGAGGAAGGGGCTATGTGTGAGCCC
back to top