FC868629

Overview
NameFC868629
Unique NameFC868629
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868629_ssr23 microsatellite FC868629_ssr23:23..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868629 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.065e-60
Identity = 125/207 (60.39%), Postives = 148/207 (71.50%), Query Frame = 2
Query:  122 ASASSLKPIXXXXXXXXXXXXXXETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRS----SKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKCIKL 730
            ++A SL+ I                  LLGF  SF    +NL +S+   D S RS    SKN   T+AFF+N    + ++SRP+  K+QEL VYE+NE DRNSPA+LKL +KP  L +GDLVPFTNKLYTGDL+KR+GITAGLCVLI+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYEDT+LAVTGGSGIFEG YGQVK  +L
Sbjct:    5 SAAMSLESISMTTLNNLSRNHQSHRSSLLGFSRSF----QNLGISSNGPDFSSRSRSTTSKNLNVTRAFFWNW-GKKTENSRPS--KIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYGQVKLRQL 204          
BLAST of FC868629 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.893e-57
Identity = 116/176 (65.91%), Postives = 131/176 (74.43%), Query Frame = 2
Query:  206 LGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNK-PSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKCIKL 730
            LGF  SF     N  +S+    +S R+     +T  FF     SS  D SRP   K+QEL VYE NE DRNSPA+LKL +KP+ L +GDLVPFTNKLYTGDL KRIGITAGLCVLI+H PEKKGDRFEA YSFYFGDYGHISVQG YLTYEDT+LA+TGGSG+FEG YGQVK  +L
Sbjct:   31 LGFSRSF----HNQRISSNSPGLSTRARSTTSSTGGFFRTICSSSSNDYSRPT--KIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQL 200          
BLAST of FC868629 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.686e-49
Identity = 112/206 (54.37%), Postives = 134/206 (65.05%), Query Frame = 2
Query:  122 ASASSLKPIXXXXXXXXXXXXXXETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSS---KNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKCIKL 730
            +SA SL+ I                  LLG   SF    +NL +S+   D S  SS   K N+T         S   +   P  +KVQEL VYEINE DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVK  +L
Sbjct:    3 SSAVSLQSISMTTLNNLSCNQQFHRSSLLGSSKSF----QNLGISSNGSDFSYPSSFTAKKNLTASRAL----SQNGNIENPRPSKVQELSVYEINELDRHSPKILK-NAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQL 199          
BLAST of FC868629 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.422e-48
Identity = 101/176 (57.39%), Postives = 124/176 (70.45%), Query Frame = 2
Query:  203 LLGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKCIKL 730
            LLGF  SF +   + +   +    S    K    T+A   N  +++     P  +KVQEL VYEIN+ DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVK  +L
Sbjct:   30 LLGFSKSFQNFGISSNGPGSSSPTSFTPKKKLTPTRALSQNLGNTE----NPRPSKVQELSVYEINDLDRHSPKILK-NAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQL 200          
The following BLAST results are available for this feature:
BLAST of FC868629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC3_ARATH8.065e-6060.39Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
AOC4_ARATH4.893e-5765.91Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC2_ARATH1.686e-4954.37Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC1_ARATH5.422e-4857.39Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC31002G12EF AbioticL1 Citrus clementina cDNA clone C31002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868629 ID=FC868629; Name=FC868629; organism=Citrus clementina; type=EST; length=730bp
CGGAGTTGTTGGTTGTTATTATCACACACACACGCGCACACTCTACTACG
CTCCATTTCATTTCTTGAATCATCGCCATCCAGATAACTTTACTCATTCA
ATATTCTGCAAATCAATAATGGCCTCTGCAAGCTCTCTCAAGCCCATCTC
TTATTCTCTGAACCTCCCTAACTCGAGATCCTCTTCTTCCGAAACCCAAA
GGTTGCTAGGTTTCAAATCATCTTTTTCCTCTCATCATCGAAACCTCAGT
CTCTCAACAACCCACCAAGATGTCTCAAGAAGAAGCTCCAAGAACAACGT
CACCACCAAAGCTTTCTTCTTCAACAAACCCAGCAGCCAACCAGATTCTT
CCAGGCCTGCTAATAATAAGGTTCAAGAACTGTTCGTGTATGAGATCAAC
GAGCGGGACAGAAACAGCCCGGCAATTCTGAAGCTAAGCCAAAAGCCTGA
ACATCTCACAATCGGCGACCTTGTGCCCTTCACGAACAAGCTCTACACCG
GCGACTTACAGAAGCGCATTGGCATCACGGCGGGGCTCTGCGTGTTGATC
AAGCACGAACCGGAGAAGAAGGGTGACCGGTTTGAAGCGATTTACAGCTT
CTACTTCGGTGACTACGGTCACATATCCGTGCAGGGAGCTTATTTGACTT
ACGAAGACACGTACTTGGCCGTCACCGGTGGCTCCGGGATCTTTGAGGGC
GTGTACGGACAAGTCAAGTGCATCAAATTG
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