FC868630

Overview
NameFC868630
Unique NameFC868630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:11..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 4.727e-55
Identity = 86/161 (53.42%), Postives = 103/161 (63.98%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLL 576
            GG   + G     G  D G   D G L  II +  F+ LL +RND RC A GFYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT HETTGGWPDAP G YAWGYCY+++++             + G QY GRGPIQL+WN NY  CG+ L + LL
Sbjct:   63 GGGGGDGGDDGCDGGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINCQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLL 223          

HSP 2 Score: 63.5438 bits (153), Expect = 4.727e-55
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3
Query:  570 LVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            L++ P+L+ TDPV+SFK+AIWFWM  Q PKPSCH VI     P
Sbjct:  222 LLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTP 264          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 6.727e-54
Identity = 77/134 (57.46%), Postives = 99/134 (73.88%), Query Frame = 1
Query:  181 KIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLL 576
            KIISR MF+ +L +RN+  C A+GFYTYDAF+ AAK+FP+FG +G+  +RKRE+AAF  QT HETTGGWP AP G YAWGYC++++ +  S+           PG+ YYGRGP+QL+WN NY  CGEAL V+LL
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLL 137          

HSP 2 Score: 66.2402 bits (160), Expect = 6.727e-54
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 3
Query:  570 LVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            L+ +PDL+ATD VLSFK+A+WFWMT Q PKPSCH+V+    +P
Sbjct:  136 LLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQP 178          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 6.074e-52
Identity = 78/158 (49.37%), Postives = 99/158 (62.66%), Query Frame = 1
Query:  118 GSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLP----GQYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G G   G    G G  GG +  ++S+E+FE LL +RND  C ARGFYTYDA + AA AFP F  +G++  RKRE+AAF  QT HETTGGW  AP G Y+WGYC+  ++  G+           P     +Y+GRGPIQL++N NY   GEA+G DLLN
Sbjct:   67 GGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEI--GATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAIGEDLLN 222          

HSP 2 Score: 69.707 bits (169), Expect = 6.074e-52
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 3
Query:  555 SLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEPIS 704
            ++G  L+ +P+L+A+DPV+SFK+A+WFWMT Q PKPSCH+VI  +  P S
Sbjct:  215 AIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSS 264          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.754e-51
Identity = 83/172 (48.26%), Postives = 105/172 (61.05%), Query Frame = 1
Query:   97 GGSAQNCGSG-----AVCGE-----RDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLL 576
            G ++  CG G     A CG        T   + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+           PG+ YYGRGPIQL+ N NY   G A+GVDLL
Sbjct:   44 GSTSDYCGDGCQSQCAGCGGGGTPVTPTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLL 215          

HSP 2 Score: 68.9366 bits (167), Expect = 1.754e-51
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            R++G  L+ +PDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +  P
Sbjct:  208 RAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSP 256          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.894e-51
Identity = 76/142 (53.52%), Postives = 94/142 (66.20%), Query Frame = 1
Query:  157 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLL 576
            GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   +KRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    SD           PG +YYGRGPIQL+ N NY   G A+GVDLL
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLL 160          

HSP 2 Score: 68.1662 bits (165), Expect = 3.894e-51
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            R++G  L+ +PDL+ATD  + FK+AIWFWMTAQPPKPS H VI  +  P
Sbjct:  153 RAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSP 201          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 153.295 bits (386), Expect = 6.603e-51
Identity = 82/171 (47.95%), Postives = 103/171 (60.23%), Query Frame = 1
Query:  100 GSAQNCGSGAVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLL 576
            GS   CG G  C  + +G G          + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AF  FG +G    RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+           PG+ YYGRGPIQL+ N NY   G A+GVDLL
Sbjct:   44 GSTPYCGDG--CQSQCSGCGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLL 212          

HSP 2 Score: 68.9366 bits (167), Expect = 6.603e-51
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            R++G  L+ +PDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +  P
Sbjct:  205 RAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSP 253          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.465e-50
Identity = 75/142 (52.82%), Postives = 93/142 (65.49%), Query Frame = 1
Query:  157 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLL 576
            GT  G +  IIS   F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   RKR++AAF AQT HETTGGW  AP G +AWGYC+ ++    +D           PG +YYGRGPIQL+ N NY   G A+GVDLL
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLL 160          

HSP 2 Score: 68.9366 bits (167), Expect = 1.465e-50
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            R++G  L+ +PDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +  P
Sbjct:  153 RAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSP 201          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 3.238e-50
Identity = 72/141 (51.06%), Postives = 96/141 (68.09%), Query Frame = 1
Query:  160 TDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F  FG +G++  +K+E+AAF AQT HETTGGWP AP G YAWGYC++ + +              PG +YYGRGPIQLT N NY   G+A+  DL+N
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLIN 215          

HSP 2 Score: 59.6918 bits (143), Expect = 3.238e-50
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 3
Query:  570 LVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            L+ +PDLL+T+P +SFK+AIWFWMT Q  KPS H+VI     P
Sbjct:  213 LINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTP 255          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.593e-49
Identity = 70/135 (51.85%), Postives = 88/135 (65.19%), Query Frame = 1
Query:  175 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            +G II+R MFE +L +R D+ C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC + +++                 YYGRGPIQLT   NY   G+ALG+DL+N
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDP------------PYYGRGPIQLTHKYNYQLAGDALGLDLVN 148          

HSP 2 Score: 71.633 bits (174), Expect = 1.593e-49
Identity = 29/48 (60.42%), Postives = 41/48 (85.42%), Query Frame = 3
Query:  555 SLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            +LG  LV +PDL+++DPV++F++AIWFWMTAQ PKPSCH+VI ++  P
Sbjct:  141 ALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTP 188          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.995e-49
Identity = 73/137 (53.28%), Postives = 92/137 (67.15%), Query Frame = 1
Query:  175 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A K F AFG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYCY R Q S G            PG +Y+GRGPIQ+++N NY   G A+GV+LLN
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLN 141          

HSP 2 Score: 65.0846 bits (157), Expect = 5.995e-49
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 3
Query:  555 SLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            ++G  L+ +PDL+A D V+SFK+A+WFWMTAQ PKPS H+VI     P
Sbjct:  134 AIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSP 181          
The following BLAST results are available for this feature:
BLAST of FC868630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI6_POPTR4.727e-5553.42Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIT_CARPA6.727e-5457.46Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI9_ORYSJ6.074e-5249.37Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SECCE1.754e-5148.26Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_HORVU3.894e-5153.5226 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_HORVU6.603e-5147.9526 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIC_SECCE1.465e-5052.82Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIX_PEA3.238e-5051.06Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI11_ORYSJ1.593e-4951.85Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHID_SOLLC5.995e-4953.28Basic endochitinase (Fragment) OS=Solanum lycopers... [more]

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Properties
Property NameValue
Genbank descriptionC31002H02EF AbioticL1 Citrus clementina cDNA clone C31002H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868630 ID=FC868630; Name=FC868630; organism=Citrus clementina; type=EST; length=709bp
CACCAAGTAAAGGATAATTGATATCATAACTCTTGCTTTCAAATGAGGCT
CATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACAAGGAG
GTTCAGCACAGAATTGTGGAAGCGGCGCTGTGTGCGGTGAACGTGATACT
GGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGAT
GTTTGAAGACTTGCTTCCGTATAGAAATGATGAACGATGCCATGCCAGAG
GCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCC
TTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTT
TTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTG
GTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCATGGG
TCCGACTACTGTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTA
TGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCG
GAGAAGCCTTGGGGGTGGACTTGTTGAACATCCAGACCTTCTTGCCACTG
ATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAG
CCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAAATGGAACCCAT
CAGCAATGA
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