FC868636

Overview
NameFC868636
Unique NameFC868636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9434 contig Ccv1_Contig9434:2..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868636 vs. ExPASy Swiss-Prot
Match: ABA2_PRUAR (Zeaxanthin epoxidase, chloroplastic OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.647e-67
Identity = 134/213 (62.91%), Postives = 164/213 (77.00%), Query Frame = 2
Query:   47 MVSSMFYNSVNLSTAVFSRTHFPVPVYKHSCIEFSRYDHCINYKFRTGT-SGQSKNPTQMKAAVA---ESPTNNSDSENKKXXXXXXXXXXXXXXXXXXXKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNES 673
            M S++FYNS+NLS AVFSRTHFP+P+ K   +EFS   H  +Y  R+ T SGQ K  T+++A VA   E P+  + ++ KK                   K+KGF+V+VFEKD+SA+RGEGQYRGPIQIQSNALAALEAID+DVAEEVMR GCVTGDRINGLVDG+SG+WY+KFDTFTPA E+GLPVTRVISR+ LQQILA+AVG+EII+N+S
Sbjct:    1 MASTLFYNSMNLSAAVFSRTHFPIPINKDFPLEFSPCIHT-DYHLRSRTRSGQKKCLTEVRATVASPTEVPSAPASTQPKKLRILVAGGGIGGLVFALAAKKKGFDVVVFEKDLSAVRGEGQYRGPIQIQSNALAALEAIDMDVAEEVMRVGCVTGDRINGLVDGVSGTWYVKFDTFTPAVERGLPVTRVISRIALQQILARAVGEEIIINDS 212          
BLAST of FC868636 vs. ExPASy Swiss-Prot
Match: ABA2_SOLLC (Zeaxanthin epoxidase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.969e-56
Identity = 123/220 (55.91%), Postives = 150/220 (68.18%), Query Frame = 2
Query:   47 MVSSMFYNSVNLSTAVFSRTHFPVPVYKHSCIEFSRYDHCINYKFRTGTSGQSKNPTQMKAAVAESP---TNNSDS--------ENKKXXXXXXXXXXXXXXXXXXXKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNES 673
            M S++FY SV+ ST+V SR   P+ + K    E      C + +   G   + K   ++KA +AE+P   T  +DS          KK                   K++GF+VLVFE+D+SAIRGEGQYRGPIQIQSNALAALEAIDLDVAE++M AGC+TG RINGLVDGISG+WY KFDTFTPA E+GLPVTRVISRMTLQQILA+AVG+EII+NES
Sbjct:    1 MYSTVFYTSVHPSTSVLSRKQLPLLISKDFSAELYHSLPCRSLE--NGHINKVKG-VKVKATIAEAPVTPTEKTDSGANGDLKVPQKKLKVLVAGGGIGGLVFALAAKKRGFDVLVFERDLSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEDIMNAGCITGQRINGLVDGISGNWYCKFDTFTPAVERGLPVTRVISRMTLQQILARAVGEEIIMNES 217          
BLAST of FC868636 vs. ExPASy Swiss-Prot
Match: ABA2_NICPL (Zeaxanthin epoxidase, chloroplastic OS=Nicotiana plumbaginifolia GN=ABA2 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.176e-55
Identity = 119/215 (55.35%), Postives = 147/215 (68.37%), Query Frame = 2
Query:   47 MVSSMFYNSVNLSTAVFSRTHFPVPVYKHSCIEFSRYDHCINYKFRTGTSGQSKNPTQM-KAAVAESP-----TNNSDSENKKXXXXXXXXXXXXXXXXXXXKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNES 673
            M S++FY SV+ ST+ FSR   P+ + K    E      C     R+  +GQ K    + KA +AE+P     T+      KK                   K++GF+VLVFE+D+SAIRGEGQYRGPIQIQSNALAALEAID+DVAE++M AGC+TG RINGLVDG+SG+WY KFDTFTPA E+GLPVTRVISRMTLQQ LA+AVG++II+NES
Sbjct:    1 MYSTVFYTSVHPSTSAFSRKQLPLLISKDFPTELYHSLPCS----RSLENGQIKKVKGVVKATIAEAPATIPPTDLKKVPQKKLKVLVAGGGIGGLVFALAAKKRGFDVLVFERDLSAIRGEGQYRGPIQIQSNALAALEAIDMDVAEDIMNAGCITGQRINGLVDGVSGNWYCKFDTFTPAVERGLPVTRVISRMTLQQNLARAVGEDIIMNES 211          
BLAST of FC868636 vs. ExPASy Swiss-Prot
Match: ABA2_CAPAN (Zeaxanthin epoxidase, chloroplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.822e-51
Identity = 103/165 (62.42%), Postives = 124/165 (75.15%), Query Frame = 2
Query:  194 SGQSKNPTQMKAAVAESPT-----NNSDSENKKXXXXXXXXXXXXXXXXXXXKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNES 673
            +G  K    +KA +AE+P      +NS+   KK                   K++GF+VLVFE+D+SAIRGEGQYRGPIQIQSNALAALEAID+DVAEE+M AGC+TG RINGLVDGISG+WY KFDTFTPA E+GLPVTRVISRMTLQQILA+  G+++I+NES
Sbjct:   45 NGHIKKVKGVKATLAEAPATPTEKSNSEVPQKKLKVLVAGGGIGGLVFALAGKKRGFDVLVFERDISAIRGEGQYRGPIQIQSNALAALEAIDMDVAEEIMNAGCITGQRINGLVDGISGNWYCKFDTFTPAVERGLPVTRVISRMTLQQILARLQGEDVIMNES 209          
The following BLAST results are available for this feature:
BLAST of FC868636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ABA2_PRUAR1.647e-6762.91Zeaxanthin epoxidase, chloroplastic OS=Prunus arme... [more]
ABA2_SOLLC4.969e-5655.91Zeaxanthin epoxidase, chloroplastic OS=Solanum lyc... [more]
ABA2_NICPL7.176e-5555.35Zeaxanthin epoxidase, chloroplastic OS=Nicotiana p... [more]
ABA2_CAPAN2.822e-5162.42Zeaxanthin epoxidase, chloroplastic OS=Capsicum an... [more]
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Properties
Property NameValue
Genbank descriptionC31002H08EF AbioticL1 Citrus clementina cDNA clone C31002H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868636 ID=FC868636; Name=FC868636; organism=Citrus clementina; type=EST; length=695bp
CAGAGAAGGGGAGAACACTGTTCAAAGAAGCCGTTGGAGAAACAAGATGG
TTTCATCTATGTTCTACAATTCAGTCAATCTTTCAACAGCTGTTTTCTCA
AGAACCCACTTCCCAGTTCCTGTATACAAACATTCTTGCATTGAATTTTC
ACGTTATGATCACTGTATTAACTACAAATTCAGGACCGGAACAAGTGGGC
AAAGCAAGAACCCGACACAAATGAAAGCTGCAGTGGCAGAGTCCCCTACT
AATAACAGTGACAGTGAAAACAAGAAATTGAGGATTTTGGTGGCTGGTGG
TGGGATTGGAGGACTTGTATTTGCTTTGGCTGCTAAAAGGAAAGGATTTG
AAGTGCTGGTGTTTGAGAAAGATATGAGTGCTATAAGAGGTGAGGGACAA
TACAGAGGTCCAATTCAGATACAAAGCAATGCATTGGCTGCTTTGGAAGC
TATTGATTTGGATGTTGCTGAGGAAGTTATGAGAGCTGGATGTGTTACCG
GTGATAGAATTAATGGTTTGGTTGATGGGATTTCTGGTTCTTGGTACATC
AAGTTTGATACTTTCACTCCTGCAGCAGAAAAGGGACTGCCAGTCACAAG
AGTAATTAGCCGAATGACTTTGCAACAAATACTAGCTAAAGCGGTTGGGG
ATGAAATCATTTTGAATGAAAGTATGTTATTGATTTTAAGGATCA
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