FC868647

Overview
NameFC868647
Unique NameFC868647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9371 contig Ccv1_Contig9371:1..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.052e-39
Identity = 94/222 (42.34%), Postives = 138/222 (62.16%), Query Frame = 1
Query:   49 ILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVDKLSSTKTQLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACR-----VKVDAESAKNFKEKIDDEYRVNLILDNLPVAV---LRQRRDG-----SQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHK-DRETD---SARIVGFEVTPNSINHEYKEWSEKN 663
            +L+F+L+  +SA  FY+PGVAP +F ++DP+ +K  KL+S++TQLPY+YY L +C+P+KI   AENLGEVLRGDRI N+ ++  M  +  C+V C      V +  E ++   E+I ++Y V+LI DNLPVA    L   RD       +   +EHG+R+GF      +   K +++NHLSF + YH+ D E D   + R+V FEV P SI  E  +  EK+
Sbjct:   12 LLLFSLICETSA--FYVPGVAPINFHQNDPVEIKAVKLTSSRTQLPYEYYSLPFCQPSKITYKAENLGEVLRGDRIVNTPFQVLMNSEKKCEVLCSQSNKPVTLTVEQSRLVAERITEDYYVHLIADNLPVATRLELYSNRDSDDKKKEKDVQFEHGYRLGF------TDVNKIYLHNHLSFILYYHREDMEEDQEHTYRVVRFEVIPQSIRLEDLKADEKS 225          
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.052e-39
Identity = 94/222 (42.34%), Postives = 138/222 (62.16%), Query Frame = 1
Query:   49 ILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVDKLSSTKTQLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACR-----VKVDAESAKNFKEKIDDEYRVNLILDNLPVAV---LRQRRDG-----SQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHK-DRETD---SARIVGFEVTPNSINHEYKEWSEKN 663
            +L+F+L+  +SA  FY+PGVAP +F ++DP+ +K  KL+S++TQLPY+YY L +C+P+KI   AENLGEVLRGDRI N+ ++  M  +  C+V C      V +  E ++   E+I ++Y V+LI DNLPVA    L   RD       +   +EHG+R+GF      +   K +++NHLSF + YH+ D E D   + R+V FEV P SI  E  +  EK+
Sbjct:   12 LLLFSLMCETSA--FYVPGVAPINFHQNDPVEIKAVKLTSSRTQLPYEYYSLPFCQPSKITYKAENLGEVLRGDRIVNTPFQVLMNSEKKCEVLCSQSNKPVTLTVEQSRLVAERITEDYYVHLIADNLPVATRLELYSNRDSDDKKKEKDVQFEHGYRLGF------TDVNKIYLHNHLSFILYYHREDMEEDQEHTYRVVRFEVIPQSIRLEDLKADEKS 225          
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.052e-39
Identity = 93/222 (41.89%), Postives = 138/222 (62.16%), Query Frame = 1
Query:   49 ILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVDKLSSTKTQLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVAC-----RVKVDAESAKNFKEKIDDEYRVNLILDNLPVAV---LRQRRDG-----SQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHK-DRETD---SARIVGFEVTPNSINHEYKEWSEKN 663
            +L+F+L+  + A  FY+PGVAP +F ++DP+ +K  KL+S++TQLPY+YY L +C+P+KI   AENLGEVLRGDRI N+ ++  M  +  C+V C      V +  E ++   E+I ++Y V+LI DNLPVA    L   RDG      +   +EHG+R+GF      +   K +++NHLSF + YH+ D E D   + R+V FEV P S+  E  +  EK+
Sbjct:   12 LLLFSLMCDTGA--FYVPGVAPINFHQNDPVEIKAVKLTSSRTQLPYEYYSLPFCQPSKITYKAENLGEVLRGDRIVNTPFQVLMNSEKKCEVLCGQSNKPVTLTVEQSRLVAERISEDYYVHLIADNLPVATRLELYSNRDGDDKKKEKDVQFEHGYRLGF------TDVNKIYLHNHLSFILYYHREDLEEDREHTYRVVRFEVIPQSVRLEDLKADEKS 225          
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.244e-37
Identity = 88/210 (41.90%), Postives = 128/210 (60.95%), Query Frame = 1
Query:   88 SFYLPGVAPRDFQRHDPLNVKVDKLSSTKTQLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACR-----VKVDAESAKNFKEKIDDEYRVNLILDNLPVA----VLRQRRDG-----SQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHK-DRETD---SARIVGFEVTPNSINHEYKEWSEKN 663
            +FY+PGVAP +F ++DP+ +K  KL+S++TQLPY+YY L +C+P KI   AENLGEVLRGDRI N+ ++  M  +  C+V C      + +  E ++   E+I +EY V+LI DNLPVA    +    RD       +   +EHG+R+GF      +   K +++NHLSF + YH+ D E D   + R+V FEV P SI  E  +  EK+
Sbjct:   23 TFYVPGVAPINFHQNDPVEIKAVKLTSSRTQLPYEYYSLPFCQPIKITYKAENLGEVLRGDRIVNTPFQVLMNSEKKCEVLCNQSNKPITLTVEQSRLVAERITEEYYVHLIADNLPVATRLELYSSNRDSDDKKKEKDVQFEHGYRLGF------TDVNKIYLHNHLSFILYYHREDMEEDQEHTYRVVRFEVIPQSIRLEDLKTGEKS 226          
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.728e-37
Identity = 89/210 (42.38%), Postives = 128/210 (60.95%), Query Frame = 1
Query:   88 SFYLPGVAPRDFQRHDPLNVKVDKLSSTKTQLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVAC-----RVKVDAESAKNFKEKIDDEYRVNLILDNLPVA----VLRQRRDG-----SQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHK-DRETD---SARIVGFEVTPNSINHEYKEWSEKN 663
            +FY+PGVAP +F ++DP+ +K  KL+S++TQLPY+YY L +C+P KI   AENLGEVLRGDRI N+ ++  M  +  C+V C      V +  E ++   E+I +EY V+LI DNLPVA    +    RD       +   +EHG+R+GF      +   K +++NHLSF + YH+ D E D   + R+V FEV P SI  E  +  EK+
Sbjct:   23 TFYVPGVAPINFHQNDPVEIKAVKLTSSRTQLPYEYYSLPFCQPNKITYKAENLGEVLRGDRIVNTPFQVLMNSEKKCEVLCGQSNKPVILTVEQSRLVAERITEEYYVHLIADNLPVATRLELYSSNRDSDDKKKEKDVQFEHGYRLGF------TDVNKIYLHNHLSFILYYHREDTEEDQEHTYRVVRFEVIPQSIRLEDLKIDEKS 226          
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.739e-29
Identity = 82/219 (37.44%), Postives = 127/219 (57.99%), Query Frame = 1
Query:   25 KKSTKTMKILVFTLLFISSAHS-FYLPGVAPRDFQRHDPLNVKVDKLSSTKTQLPYDYYFLK-YCKPAK-IVNSAENLGEVLRGDRIENSVYEFEMRED-LSCKV----ACRVKVDAESAKNFKEKIDDEYRVNLILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQG---SKEEKYFINNHLSFRVMYHKDRETDSARIVGFEVTPNSINHEYKE 648
            K + K +   +   +F++  +  FYLPG+ P DF + +   +KV+K++S  TQ+PY YY L   C+P + I++  ENLGE+L GDRIENS Y F    D   CKV    +C   +  E  K  +++I ++YRV+ +LD LPV     R+ G  ++  + GF +GF    +G   +  EKY +NNHL   + YH +   +++RIVGFE+ P S   +YK+
Sbjct:    2 KINKKQIVFFILFSIFLNHVNGIFYLPGMIPHDFAQGEEGAIKVNKITSVHTQIPYKYYQLPGVCQPKEGIIDDTENLGEILLGDRIENSDYTFNFLTDGGKCKVINSESCSPIIKKEDLKVLEDRIQNQYRVHWLLDGLPV-----RQTGRLAS--DPGFDLGFMTLAEGQTVATAEKY-LNNHLEITIFYHSNPTDNTSRIVGFEIFPTS--RQYKK 210          
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: TMN1_YEAST (Transmembrane 9 superfamily member 1 OS=Saccharomyces cerevisiae GN=EMP70 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.294e-18
Identity = 67/242 (27.69%), Postives = 107/242 (44.21%), Query Frame = 1
Query:   52 LVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVDKLSSTKTQ------------------LPYDYYFLKY--CKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVNLILDNLPVAVLRQRRDGSQSTT-YEHGFRVGFKGNYQGSKEEKY----------------------------FINNHLSFRVMYHKDRETDSARIVGFEVTPNSI 630
            L+    F+S+  +FYLPGVAP  ++ +D + + V+ L+ +                       YDYY+ ++  C+P K+    E+LG V+ GDRI NS ++  M ++  C+  C+  +  + AK   + I + +  N ++D LP A  R+  DG   T+ Y  GF +GF    QG+  E                              +  NH    + YH DR   + R+VG  V P SI
Sbjct:   10 LLLLYFFVSTVKAFYLPGVAPTTYRENDNIPLLVNHLTPSMNYQHKDEDGNNVSGDKENFLYSYDYYYNRFHFCQPEKVEKQPESLGSVIFGDRIYNSPFQLNMLQEKECESLCKTVIPGDDAKFINKLIKNGFFQNWLIDGLPAA--REVYDGRTKTSFYGAGFNLGFVQVTQGTDIEATPKGAETTDKDVELETRNDRNMVKTYELPYFANHFDIMIEYH-DRGEGNYRVVGVIVEPVSI 248          
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 63/239 (26.36%), Postives = 121/239 (50.63%), Query Frame = 1
Query:   19 PKKKSTKTMKILVFTLLFISSA------HSFYLPGVAPRDFQRHDPLN-------VKVDKLSSTKTQLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDD-------EYRVNLILDNLPVAVLRQRRDGSQ--STTYEHGFRVGFKGNYQGS--------KEEKYFINNHLSFRVMYH-KDRETDSARIVGFEVTPNSINHEY 642
            P     +  ++L+ +LL + +        +FYLPG+AP +F   +  N       + V++L S ++ LPY+Y    +C+ ++    +ENLG+VL G+RIE S Y+F   +  +CK+ C    + E A++ K+K+D         Y+ + I+DN+PV    +  D  +  +  +  G  +  KG+ + +        + + ++I NH+  ++ YH  +  +  AR+V  ++ P S  H +
Sbjct:    6 PASPPAQGSRLLLLSLLLLGTVPGPRPGSAFYLPGLAPVNFCAEEKSNECKADIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSENLGQVLFGERIEPSPYKFTFNKKETCKLVCTKTYNTEKAED-KQKLDFLKKSMLLNYQHHWIVDNMPVTWCYEVEDSQKFCNPGFPIGCYITDKGHAKDACVISSEFHERDTFYIFNHVDIKIYYHVVETGSMGARLVAAKLEPKSFKHTH 243          
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 62/240 (25.83%), Postives = 121/240 (50.42%), Query Frame = 1
Query:   19 PKKKSTKTMKILVFTLLFISSA------HSFYLPGVAPRDFQRHDP--------LNVKVDKLSSTKTQLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDD-------EYRVNLILDNLPVAVLRQRRDGSQ--STTYEHGFRVGFKGNYQGS--------KEEKYFINNHLSFRVMYH-KDRETDSARIVGFEVTPNSINHEY 642
            P     +  ++L+ +LL + +        +FYLPG+AP +F   +         + + V++L S ++ LPY+Y    +C+ ++    +ENLG+VL G+RIE S Y+F   ++ +CK+ C      E A++ K+K+D         Y+ + I+DN+PV    +  D  +  +  +  G  +  KG+ + +        + + ++I NH+  ++ YH  +  +  AR+V  ++ P S  H +
Sbjct:    6 PASLPARGPRLLLLSLLLLGTVPGPRPGSAFYLPGLAPVNFCTEEKKSNECKAEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSENLGQVLFGERIEPSPYKFTFNKEETCKLVCTKTYHTEKAED-KQKLDFLKKSMLLNYQHHWIVDNMPVTWCYEVEDNQKFCNPGFPIGCYITDKGHAKDACVISSEFHERDTFYIFNHVDIKIQYHVVETGSMGARLVAAKLEPKSFRHTH 244          
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.385e-18
Identity = 62/231 (26.84%), Postives = 118/231 (51.08%), Query Frame = 1
Query:   46 KILVFTLLFISS------AHSFYLPGVAPRDFQRHDP--------LNVKVDKLSSTKTQLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDD-------EYRVNLILDNLPVAVLRQRRDGSQ--STTYEHGFRVGFKG--------NYQGSKEEKYFINNHLSFRVMYH-KDRETDSARIVGFEVTPNSINHEY 642
            ++L+ +LL + +      +  FYLPG+AP +F   +         + + V++L S ++ LPY+Y    +C+ ++    +ENLG+VL G+RIE S Y+F   ++ +CK+ C      E A++ K+K++         Y+ + I+DN+PV       DG +  +  +  G  +  KG        N +  + + ++I NH+  ++ YH  +  +  AR+V  ++ P S  H +
Sbjct:   15 RLLLLSLLLLGAVPGPRRSGGFYLPGLAPVNFCDEEKKSDECKAEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSENLGQVLFGERIEPSPYKFTFNKEETCKLVCTKTYHTEKAED-KQKLEFLKKSMLLNYQHHWIVDNMPVTWCYDVEDGQRFCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIYYHVVETGSMGARLVAAKLEPKSFKHTH 244          
The following BLAST results are available for this feature:
BLAST of FC868647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TM9S4_PONAB5.052e-3942.34Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_HUMAN5.052e-3942.34Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN5.052e-3941.89Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]
TM9S4_MOUSE1.244e-3741.90Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_RAT4.728e-3742.38Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
PHG1A_DICDI4.739e-2937.44Putative phagocytic receptor 1a OS=Dictyostelium d... [more]
TMN1_YEAST1.294e-1827.69Transmembrane 9 superfamily member 1 OS=Saccharomy... [more]
TM9S2_MOUSE2.882e-1826.36Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_RAT4.916e-1825.83Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB8.385e-1826.84Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]

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Properties
Property NameValue
Genbank descriptionC31003A07EF AbioticL1 Citrus clementina cDNA clone C31003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868647 ID=FC868647; Name=FC868647; organism=Citrus clementina; type=EST; length=663bp
AACACGAAAATGAATTCACCTAAGAAAAAAAGCACAAAAACAATGAAAAT
ACTTGTCTTCACTCTCCTTTTCATCTCCTCCGCCCACTCTTTCTACCTTC
CCGGCGTTGCTCCTCGTGATTTTCAAAGACACGATCCACTAAATGTCAAA
GTGGACAAACTATCATCTACAAAGACTCAACTGCCATATGACTACTACTT
CTTGAAGTACTGTAAGCCTGCAAAGATTGTGAACAGTGCAGAAAATTTGG
GGGAGGTTCTTCGTGGTGACAGAATTGAAAATTCTGTGTATGAATTCGAA
ATGAGGGAGGATCTGTCATGTAAAGTAGCCTGTCGAGTAAAAGTTGATGC
TGAATCTGCAAAAAATTTTAAAGAAAAAATTGATGATGAATACCGAGTTA
ATTTGATTCTTGACAACCTTCCAGTTGCTGTTCTCAGACAAAGAAGAGAT
GGAAGTCAGTCTACGACATATGAACATGGTTTTCGTGTTGGATTCAAAGG
AAATTATCAAGGGAGCAAAGAAGAGAAATACTTTATCAATAACCACTTGA
GCTTCAGAGTCATGTACCACAAGGATCGTGAGACTGATTCTGCACGAATT
GTGGGGTTTGAGGTTACTCCAAACAGTATCAATCATGAATACAAGGAGTG
GTCTGAAAAGAAC
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