FC868650

Overview
NameFC868650
Unique NameFC868650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.467e-68
Identity = 130/188 (69.15%), Postives = 144/188 (76.60%), Query Frame = 1
Query:  118 LRATPFLGQSRTTANALKDVVPMGNAKYTMVISW*P*PTPSAFLSLFVSVFREIH*RYCCVQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681
            ++ATPFLGQ++  AN L+DVV MG+A++TM                                 N+LWYGPDRVKYLGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCI PEVLEKW++VDFKEPVWFKAG+QIFS+GGLDYL    LVHAQSILAVL FQVVLMG
Sbjct:   14 VKATPFLGQTKN-ANPLRDVVAMGSARFTM--------------------------------SNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMG 168          
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.180e-62
Identity = 124/187 (66.31%), Postives = 136/187 (72.73%), Query Frame = 1
Query:  127 TPFL-GQSRT-TANALKDVVPMGNAKYTMVISW*P*PTPSAFLSLFVSVFREIH*RYCCVQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681
            TPFL GQ R  +A+ L+D+    N + TM                                GN+LWYGPDRVKYLGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC+ PEVL+KW+ V+FKEPVWFKAG+QIFSEGGLDYL    LVHAQSILAVL FQV+LMG
Sbjct:   17 TPFLSGQGRAASASPLRDIAAATNGRITM--------------------------------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMG 171          
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.087e-51
Identity = 99/123 (80.49%), Postives = 103/123 (83.74%), Query Frame = 1
Query:  313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681
            +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAGAQIFSEGGLDYL    LVHAQSILA+   QVVLMG
Sbjct:   46 IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMG 167          
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.087e-51
Identity = 99/123 (80.49%), Postives = 103/123 (83.74%), Query Frame = 1
Query:  313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681
            +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAGAQIFSEGGLDYL    LVHAQSILA+   QVVLMG
Sbjct:   46 IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMG 167          
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.141e-50
Identity = 96/128 (75.00%), Postives = 106/128 (82.81%), Query Frame = 1
Query:  298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681
            VQ +  WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYL    LVHAQSILA+   QV+LMG
Sbjct:   45 VQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMG 171          
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.145e-49
Identity = 97/123 (78.86%), Postives = 102/123 (82.93%), Query Frame = 1
Query:  313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681
            +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYL    LVHAQSILA+   QVVLMG
Sbjct:   48 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMG 169          
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.145e-49
Identity = 97/123 (78.86%), Postives = 102/123 (82.93%), Query Frame = 1
Query:  313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681
            +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYL    L+HAQSILAV   QVVLMG
Sbjct:   48 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMG 169          
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.145e-49
Identity = 96/128 (75.00%), Postives = 103/128 (80.47%), Query Frame = 1
Query:  298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681
            V     WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYL    LVHAQSILA+   QVVLMG
Sbjct:   33 VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 159          
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.145e-49
Identity = 96/123 (78.05%), Postives = 102/123 (82.93%), Query Frame = 1
Query:  313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681
            +WYGPDR KYLGPFS Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC  PE+LEK   V F E VWFKAG+QIF+EGGLDYL    L+HAQSILA+   QVVLMG
Sbjct:   48 IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEK-NGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMG 169          
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.496e-49
Identity = 96/123 (78.05%), Postives = 102/123 (82.93%), Query Frame = 1
Query:  313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681
            +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYL    L+HAQSILA+   QVVLMG
Sbjct:   48 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMG 169          
The following BLAST results are available for this feature:
BLAST of FC868650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB23_SOLLC5.467e-6869.15Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU1.180e-6266.31Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_ORYSJ2.087e-5180.49Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.087e-5180.49Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_SPIOL5.141e-5075.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC1.145e-4978.86Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC1.145e-4978.86Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_CUCSA1.145e-4975.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA1.145e-4978.05Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB26_PETSP1.496e-4978.05Chlorophyll a-b binding protein 37, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31003A10EF AbioticL1 Citrus clementina cDNA clone C31003A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868650 ID=FC868650; Name=FC868650; organism=Citrus clementina; type=EST; length=683bp
GATAGACTTCAGACACATATTATCTCCACAGTTCCAACCGACACAACATC
CATAATAACAACTCTCAGGACAATGGCATCAATAATGGCGGCTGCTACTG
CTAGCTCTAGCACTTCTCTTAGGGCAACCCCATTTCTTGGCCAGAGTAGG
ACAACTGCTAACGCTCTAAAAGATGTTGTTCCGATGGGGAATGCCAAGTA
CACAATGGTAATAAGTTGGTAACCTTAACCTACACCTTCAGCCTTTTTGT
CTCTCTTTGTCTCTGTGTTTAGGGAAATTCATTGAAGATATTGTTGTGTC
CAGGGAAATGAACTGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACC
CTTTTCAGCACAGACTCCATCATACTTGACTGGAGAGTTTCCAGGTGACT
ATGGATGGGACACTGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAGG
AACAGGGCTCTTGAGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCACT
AGGCTGCATCACCCCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTTCA
AGGAACCGGTTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGC
CTTGACTACTTGGCGAAACACTACCTTGTTCATGCTCAAAGCATTCTGGC
TGTCCTGTGATTCCAGGTTGTCCTCATGGGGCT
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