FC868652

Overview
NameFC868652
Unique NameFC868652
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8975 contig Ccv1_Contig8975:14..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.262e-103
Identity = 185/221 (83.71%), Postives = 193/221 (87.33%), Query Frame = 2
Query:   92 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKSMXXXXXXXXXXXXMAML 754
            E ARQI+G+R +QS T   RK SFVVRAASTPPVKQGA+R LWFASKQSLSYLDG LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK LGGSGDPAYPGG LFNPLG GKDEKSM            +AML
Sbjct:   17 EAARQIIGSRISQSVT---RKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAML 234          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 7.167e-99
Identity = 178/222 (80.18%), Postives = 186/222 (83.78%), Query Frame = 2
Query:   92 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA-DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKSMXXXXXXXXXXXXMAML 754
            E  RQ   ARS  S  G SRKG  +VRAA+TPPVKQG  DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGAVGAIAPE LGK GLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK  GGSG+PAYPGG  FNPLG GKDEKS+            +AML
Sbjct:   17 EAVRQSFRARSLPSSVGCSRKG--LVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAML 236          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.742e-28
Identity = 81/200 (40.50%), Postives = 103/200 (51.50%), Query Frame = 2
Query:  107 ILGARSAQSPTGSS-RKGSFVV----RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLG 688
            I+GA  A    G   R   F+     R+ +   V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        KW A  E+++ R+AMLGA G   PE L K G++      +W+       AG   Y+ D  TLFV+E+ L+G+AE RR+ D   PG +         K  G   D  YPGG  F+PLG G
Sbjct:   26 IVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVL---NTPSWY------TAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG--TDVGYPGGLWFDPLGWG 208          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.645e-28
Identity = 73/174 (41.95%), Postives = 96/174 (55.17%), Query Frame = 2
Query:  170 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLG 688
            R+A+T  V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        +W    E+++ R+AMLGA G   PE+L K G++      +W+       AG   Y+ D  TLF++E+ L+G+AE RR+ D   PG +         K  G   D  YPGG  F+PLG G
Sbjct:   52 RSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL------RWNQQAELVHCRWAMLGAAGIFIPELLTKIGIL---NTPSWY------TAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG--TDVGYPGGLWFDPLGWG 208          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.526e-24
Identity = 70/178 (39.33%), Postives = 93/178 (52.25%), Query Frame = 2
Query:  173 AASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703
            +A T   K  A +  W     S  YL GSL GD GFDPLGL+ DPE        KW    E++NGR+AMLG  G + PE+  K G+I       W+       AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+ +     F++Y    G+  YPGG +FNPL     +++
Sbjct:   42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPGG-IFNPLNFAPTQEA 201          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.603e-24
Identity = 74/183 (40.44%), Postives = 95/183 (51.91%), Query Frame = 2
Query:  134 PTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPL 679
            P G S   SF V A      K+G     W     S  YL GSLPGD GFDPLGL+ DPE        +W    E++NGR+AMLG  G + PE+    G+I       W+       AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+ +     F++Y   +G+  YPGG +FNPL
Sbjct:   38 PVGCSPSASFKVEA------KKGE----WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII---NVPKWY------AAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGG-IFNPL 192          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.134e-18
Identity = 62/155 (40.00%), Postives = 83/155 (53.55%), Query Frame = 2
Query:  218 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPL 679
            W    QS +YLDGSL GD GFDPL L+ DPE      + +W    +V+NGR+AMLG  G + PE+L KAGL+    A  W +       G   Y+A   T   + M+   + E RR+QD  NPGS+ +     F+ Y     +  YP G +FNPL
Sbjct:   36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPE------DLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLM---NAPEWLRL-----PGKETYFASSSTALRVHMS-STYVEIRRWQDIKNPGSVNQDPI--FKSYSLPPHECGYP-GRVFNPL 172          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.967e-17
Identity = 65/204 (31.86%), Postives = 101/204 (49.51%), Query Frame = 2
Query:   92 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF----EKYLGGSGDPAYPGGTLFNPLGL 685
            ++++ +L   S      S+     VV AA+  P K          +     +LDGSLPGD+GFDPLGL  DP     F+  KW    E+I+GR+AML  +G      +G+A      T + WF+ G  P A   +++     TL   ++ LMG+ E +R+ D+ +P S   ++   +    E +   +G+  YPGG  F+PL L
Sbjct:   24 KSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMLAVLGI----FVGQAW-----TGIPWFEAGADPGAVAPFSFG----TLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSL 208          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 68/209 (32.54%), Postives = 103/209 (49.28%), Query Frame = 2
Query:   98 ARQILGARSAQSPTGSSRKGSFVVRAAST-----PPVKQGADR--PLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF----EKYLGGSGDPAYPGGTLFNPLGL 685
            ++ +L A  A    G++    F V AA+      P V+ G +   P W         LDGSLPGDYGFDPLGL  DP     F+  KW    E+I+GR+AM   +G      +G+A      + + WF+ G  P A   +++     TL   ++ LMG+ E +R+ D+ +P S   ++   +    E +   +G+  YPGG  F+PL L
Sbjct:   23 SQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEW---------LDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----TLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLAL 203          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.691e-15
Identity = 68/205 (33.17%), Postives = 96/205 (46.83%), Query Frame = 2
Query:  107 ILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQ----------DWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGL 685
            +LGA      T   R   FVV AA+  P K          +     +LDGSLPGD+GFDPLGL  DP     F+  KW    E+I+GR+AM   +G      +G+A      + + WF+ G  P A   +++     +L   ++ LMG+ E +R+           DWA P S   + F  F      +G+  YPGG  F+PL L
Sbjct:   27 LLGAHVTARVTTPKR---FVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----SLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANF------TGEQGYPGGKFFDPLAL 203          
The following BLAST results are available for this feature:
BLAST of FC868652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB13_SOLLC1.262e-10383.71Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA7.167e-9980.18Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB12_PETHY1.742e-2840.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC8.645e-2841.95Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_ARATH1.526e-2439.33Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA2.603e-2440.44Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB120_HORVU2.134e-1840.00Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB4_SPIOL8.967e-1731.86Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC9.914e-1632.54Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC1.691e-1533.17Chlorophyll a-b binding protein CP24 10B, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC31003A12EF AbioticL1 Citrus clementina cDNA clone C31003A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868652 ID=FC868652; Name=FC868652; organism=Citrus clementina; type=EST; length=756bp
GATCGTATTGAAGTAGAGAAACATCAGGAAAAAAGAAAATTAAAAAATGG
CAACCCAAGCTTTGGTTTCATCATCTCTTACATCTTCAGTGGAGACTGCG
AGACAAATTCTTGGAGCAAGATCAGCTCAATCCCCAACTGGGTCATCAAG
AAAAGGTTCCTTTGTTGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCAAG
GAGCAGACAGACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACTTG
GATGGCAGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGA
CCCTGAAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCG
AGGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCA
CCGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGC
CTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGG
CAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCC
GAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCA
ATACTTCCTCGGATTCGAGAAATACTTGGGAGGTTCCGGCGATCCGGCTT
ACCCTGGAGGAACTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAGAAG
TCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAAATGAAAAATGGCAAT
GTTGGC
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