FC868663

Overview
NameFC868663
Unique NameFC868663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8197 contig Ccv1_Contig8197:141..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_ARATH (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.717e-26
Identity = 65/105 (61.90%), Postives = 75/105 (71.43%), Query Frame = 1
Query:   79 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAEP-RIREDR 390
            ++V LVTD+ TNKP+GYAFIEYMHTRDMKAAYKQADG+K+DGRRVLVDVERGRTVPNWRPR                 +   G EQ+P    S+S EP R RE+R
Sbjct:  165 KRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPR---RLGGGLGTSRVGGGEEIVG-EQQPQGRTSQSEEPSRPREER 265          
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_XENTR (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 52/104 (50.00%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   79 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAEPRIREDR 390
            +++ +V +K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV  WRPR                N R+SGR+ + SR   R  +     DR
Sbjct:  130 KRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDERDRDRERERDR 232          
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_MOUSE (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.078e-20
Identity = 50/104 (48.08%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   79 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAEPRIREDR 390
            +++ +V  K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV  WRPR                N R+SGR+            P    DR
Sbjct:  130 KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDR 233          
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_HUMAN (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.078e-20
Identity = 50/104 (48.08%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   79 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAEPRIREDR 390
            +++ +V  K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV  WRPR                N R+SGR+            P    DR
Sbjct:  130 KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDR 233          
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_BOVIN (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.078e-20
Identity = 50/104 (48.08%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   79 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAEPRIREDR 390
            +++ +V  K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV  WRPR                N R+SGR+            P    DR
Sbjct:  130 KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDR 233          
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_DROME (U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila melanogaster GN=snRNP70K PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.349e-20
Identity = 52/104 (50.00%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   79 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAEPRIREDR 390
            +K+ L+ D+E+ KP+GYAFIEY H RDM AAYK ADG+K+D +RVLVDVER RTV  W PR                N ++SGRE +  R   R    R REDR
Sbjct:  129 KKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGRE-DNERERERYRLEREREDR 231          
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_XENLA (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 51/97 (52.58%), Postives = 57/97 (58.76%), Query Frame = 1
Query:  109 TNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGRE-----QEPSRGPSRSAEPRIRE 384
            + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV  WRPR                N R+SGR+      E  R   R    R RE
Sbjct:  143 SGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRERERDRRERSRE 239          
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_DICDI (U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium discoideum GN=snrnp70 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 44/99 (44.44%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  103 KETNKPR---GYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAEPRIREDR 390
            K++N P    GYAFIE+   RDMKAAYKQADG K+D RR++VD+ERGR + NW+PR                NQ +SGRE   SR   +  E    +++
Sbjct:  132 KDSNNPEKHTGYAFIEFERERDMKAAYKQADGMKIDDRRIVVDIERGRVIKNWKPRKFGGGLGNTRAGGVDVNQTFSGREMSESREKEKEREKEKEKEK 230          
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_SCHPO (U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Schizosaccharomyces pombe GN=usp101 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   79 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 261
            E++R+V +K T K  GYAF+ +   RD+K AYK + G  L+GRR++VDVERGRTV  W PR
Sbjct:  127 ERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDVERGRTVKGWLPR 187          
The following BLAST results are available for this feature:
BLAST of FC868663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RU17_ARATH1.717e-2661.90U1 small nuclear ribonucleoprotein 70 kDa OS=Arabi... [more]
RU17_XENTR2.837e-2150.00U1 small nuclear ribonucleoprotein 70 kDa OS=Xenop... [more]
RU17_MOUSE1.078e-2048.08U1 small nuclear ribonucleoprotein 70 kDa OS=Mus m... [more]
RU17_HUMAN1.078e-2048.08U1 small nuclear ribonucleoprotein 70 kDa OS=Homo ... [more]
RU17_BOVIN1.078e-2048.08U1 small nuclear ribonucleoprotein 70 kDa OS=Bos t... [more]
RU17_DROME5.349e-2050.00U1 small nuclear ribonucleoprotein 70 kDa OS=Droso... [more]
RU17_XENLA3.467e-1952.58U1 small nuclear ribonucleoprotein 70 kDa OS=Xenop... [more]
RU17_DICDI1.115e-1744.44U1 small nuclear ribonucleoprotein 70 kDa OS=Dicty... [more]
RU17_SCHPO1.080e-1254.10U1 small nuclear ribonucleoprotein 70 kDa homolog ... [more]
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Properties
Property NameValue
Genbank descriptionC31003C02EF AbioticL1 Citrus clementina cDNA clone C31003C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868663 ID=FC868663; Name=FC868663; organism=Citrus clementina; type=EST; length=671bp
TGGTAAATTTGCTATCATCAGTTAATCTGCAACTCTTGCAATGGTGGTGA
TTCATCTCGCGATGGCAAGCCCTGTGCTGAAAAGGTTCGGTTGGTTACTG
ATAAAGAGACAAATAAACCTAGAGGTTATGCTTTCATCGAGTACATGCAC
ACTCGGGATATGAAAGCTGCATATAAACAAGCTGATGGGAGGAAGCTTGA
TGGCAGAAGGGTGCTTGTTGATGTTGAGCGTGGTCGAACAGTCCCTAATT
GGCGTCCTCGCAGGCTAGGCGGTGGACTTGGAACAACCAGGGTTGGAGGG
GAAGAAGTTAACCAGAGATATTCTGGAAGGGAGCAAGAGCCTTCAAGAGG
ACCATCTCGGTCTGCAGAGCCTAGGATACGAGAGGATCGACATGGTGACC
GGGATATGGAAAGATCCCGTGAAAGGGGGAGGGATAGAGAGAAGGAACGG
GAGAAGTCCCGTGAGCTCTCCCATGACAGACCAAGAGATCGTGATCATAG
AGATGATAGACACCATAGAGATCGTGACAGAACTAGAGACAGAGAGAGGG
AGAGAGACCGAGGGCGTGAACGTGACCGTGACCGAACACGTGATCGTGAT
CGCGGCCGGGATCGTGGTCGTGATCATGAACGTGATAGAGAAAAAGACCG
TGATAGGGAGCGTGATCGTGA
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