FC868669

Overview
NameFC868669
Unique NameFC868669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13299 contig Ccv1_Contig13299:253..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.056e-64
Identity = 121/166 (72.89%), Postives = 137/166 (82.53%), Query Frame = 2
Query:  170 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667
            REVWA NLESEFELIS++ID YPFISMDTEFPG++++ D+        R   P D Y +LK+NVDAL+LIQVG TLSD +GNLPDLG   +  FIWEFNFRDFD+A DAHAPDSIELLR QGIDFERN ++GV+S RFAELMMSSGLVCNE VSWVTFHSAYDFGY
Sbjct:   20 REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDL--------RFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGY 177          
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.580e-64
Identity = 117/166 (70.48%), Postives = 137/166 (82.53%), Query Frame = 2
Query:  170 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667
            R+VWA NLESEF+LI  +++ YPFISMDTEFPG++Y+ D+D       R+  P+  Y +LKSNVDAL+LIQVG TLSD+ GNLPDLG   N ++IWEFNFRDFD+  D HAPDSIELLR  GIDFERNR+EGV+S RFAELMMSSGL+CNESVSWVTFHSAYDFGY
Sbjct:   15 RDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLD-----VLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGY 175          
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.339e-47
Identity = 95/167 (56.89%), Postives = 121/167 (72.46%), Query Frame = 2
Query:  170 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667
            REVW  NLESE  LI +V+D +PF++MDTEFPG+V RP     T   +       HY+ LK+NV+ L +IQ+G T SD  GNLP  G+  +NK+ IW+FNFR+FD+ +D +A DSIELLR  GIDF +N + G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGY
Sbjct:   13 REVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY-------HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGT--DNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGY 170          
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.264e-44
Identity = 91/167 (54.49%), Postives = 120/167 (71.86%), Query Frame = 2
Query:  170 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667
            REVW  NL  EF LI +++D++ +I+MDTEFPG+V +P    +T  Y        +Y+ LK NVD L LIQVG T SD +GNLP  G+   +KF IW+FNFR+F+I  D +A +SIELLR  GIDF++N ++G+D VRF ELMMSSG+V N+++SWVTFH  YDFGY
Sbjct:   13 REVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKP---VATFKYNNDL----NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGT---DKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGY 169          
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.532e-43
Identity = 88/167 (52.69%), Postives = 115/167 (68.86%), Query Frame = 2
Query:  170 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667
            REVW  NL+ E +LI  V+D +P+++MDTEFPG+V RP     S   Y        HY+ LK+NV+ L +IQ+G T S+  GNLP  G+  +   IW+FNFR+FD+ +D  A DSIELL+  GID  +N  +G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGY
Sbjct:   13 REVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY--------HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGT--DKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGY 169          
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.928e-43
Identity = 88/167 (52.69%), Postives = 115/167 (68.86%), Query Frame = 2
Query:  170 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667
            REVW  NLE E  LI Q ID +P+++MDTEFPG+V +    +P+  PY    + +  Y  LK+NV+ L LIQ+G TLSD  GNLP  G+  N + IW+FNFR+F++ +D  A DSIELLR   ID E+N + GVD+ RFAEL+M SG+V N+ + WVTFH  YDFGY
Sbjct:   17 REVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN--YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGT--NKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGY 179          
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.654e-37
Identity = 79/167 (47.31%), Postives = 110/167 (65.87%), Query Frame = 2
Query:  170 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667
            R+VW++NL+ E  LI  +I+RYP +SMDTEFPG+V RP  V  S+  Y        HY+ L++NVD+L +IQ+G  LSD  GN P           W+FNF  F++  D +AP+SIELL   GIDF+++++ G++   FAEL++ SGLV  E V+W+TFHS YDF Y
Sbjct:   23 RDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDY--------HYQTLRANVDSLKIIQIGLALSDEEGNAPV------EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAY 174          
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.314e-33
Identity = 73/166 (43.98%), Postives = 109/166 (65.66%), Query Frame = 2
Query:  173 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667
            EVWASNLE E   I +++  Y +I+MDTEFPG+V         RP    R   D+ Y++L+ NVD L +IQ+G T ++  G  P   SG N    W+FNF+ F++  D ++ DSI+LL   G+ F+++ +EG+D++ FAEL+M+SG+V  ++V W++FHS YDFGY
Sbjct:   14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVV--------VRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGY 164          
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.314e-33
Identity = 73/166 (43.98%), Postives = 109/166 (65.66%), Query Frame = 2
Query:  173 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667
            EVWASNLE E   I +++  Y +I+MDTEFPG+V         RP    R   D+ Y++L+ NVD L +IQ+G T ++  G  P   SG N    W+FNF+ F++  D ++ DSI+LL   G+ F+++ +EG+D++ FAEL+M+SG+V  ++V W++FHS YDFGY
Sbjct:   14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVV--------VRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGY 164          
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.589e-32
Identity = 74/166 (44.58%), Postives = 106/166 (63.86%), Query Frame = 2
Query:  173 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+G T  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ +EG+++  FAEL+M+SG+V  E V W++FHS YDFGY
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGY 164          
The following BLAST results are available for this feature:
BLAST of FC868669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CAF1I_ARATH2.056e-6472.89Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CAF1K_ARATH4.580e-6470.48Probable CCR4-associated factor 1 homolog 11 OS=Ar... [more]
CAF1G_ARATH1.339e-4756.89Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1J_ARATH5.264e-4454.49Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1F_ARATH1.532e-4352.69Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1B_ARATH9.928e-4352.69Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CAF1_SCHPO3.654e-3747.31Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CNOT8_MOUSE9.314e-3343.98CCR4-NOT transcription complex subunit 8 OS=Mus mu... [more]
CNOT8_HUMAN9.314e-3343.98CCR4-NOT transcription complex subunit 8 OS=Homo s... [more]
CNOT7_MOUSE1.589e-3244.58CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionC31003C08EF AbioticL1 Citrus clementina cDNA clone C31003C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868669 ID=FC868669; Name=FC868669; organism=Citrus clementina; type=EST; length=667bp
CTCAAGCATCATTCGTTACCAGGAGCAGTAAGGACTTTCAAATCTCACCC
ACGAAGCGTCGAGCTGCAAGCTATCTAGCTGACCATCATCACTCATCATG
GGAGTTGAAGATTTTTCTACGGATTTAGATTCAAATTCAAATTCCAGCTC
ATCGAATTCGATTATAATACGCGAAGTCTGGGCGTCTAATTTGGAATCCG
AATTCGAACTCATCAGCCAAGTCATCGATCGGTACCCTTTTATTTCCATG
GACACCGAATTCCCCGGTCTTGTCTACCGACCCGATGTGGACCCCTCCAC
CAGGCCTTACTTCCGTCAACGCAAGCCGTCCGATCACTACAAGGTTCTGA
AATCCAACGTCGACGCCTTGAACTTGATCCAGGTGGGCCCCACTCTCTCT
GACTCTTCCGGTAACTTGCCGGATTTGGGCTCCGGGGGCAACAATAAATT
CATCTGGGAGTTCAACTTCCGGGACTTCGATATCGCGACGGACGCCCACG
CGCCGGATTCGATAGAGCTGCTGAGACTGCAGGGGATTGACTTTGAGCGC
AACAGGAAGGAAGGCGTTGACTCGGTTCGGTTCGCCGAGTTGATGATGTC
GTCGGGACTCGTCTGTAACGAATCGGTGAGTTGGGTCACGTTCCACAGCG
CGTACGATTTCGGGTAC
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