FC868677

Overview
NameFC868677
Unique NameFC868677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9376 contig Ccv1_Contig9376:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868677 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.335e-27
Identity = 67/121 (55.37%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  361 METERKKQE---LRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEA 714
            METE+K  +   L+HL F+RIA I  L  VS+LY+YAK+NSGPL+S V  VE AVT VV PVYQKFK VP              S KFDEHAPP+AK+V +Q H LI  A++KAQ  V EA
Sbjct:    1 METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEA 121          
BLAST of FC868677 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.361e-16
Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = 1
Query:  376 KKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVI 708
            +++ L++L F+++AAI  +VC SSLY+YAK NSGPL+  V TVE  V  V+GPVY+KF  VP             +  + + H P L KR + Q      T +QKA +L +
Sbjct:   16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQA----ITVAQKAPELAL 122          
BLAST of FC868677 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  349 RSEDMETERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQKLVIEA 714
            ++ +ME   +++ LR+L F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP             + ++ D   PP       LA+  A++V    L+ TA+  A+  +  A
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARA 152          
BLAST of FC868677 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  349 RSEDMETERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQKLVIEA 714
            ++ +ME   +++ LR+L F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP             + ++ D   PP       LA+  A++V    L+ TA+  A+  +  A
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARA 152          
BLAST of FC868677 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 41/115 (35.65%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  367 TERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIE 711
            T+ +K+ L++L F++ AA++AL+  + +Y  AK  SGPL+  V +VE AV  VVGPVY+K+  VP             +  + D   PP+ K+V++Q  S  + A   A+ L  E
Sbjct:   15 TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASE 129          
The following BLAST results are available for this feature:
BLAST of FC868677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y1736_ARATH1.335e-2755.37REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
SRP_VITRI2.361e-1640.54Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y5513_ORYSJ4.168e-1334.35REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI4.168e-1334.35REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
Y3550_ARATH5.444e-1335.65REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC31003D06EF AbioticL1 Citrus clementina cDNA clone C31003D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868677 ID=FC868677; Name=FC868677; organism=Citrus clementina; type=EST; length=714bp
ATTATTATGGGTAAGTGTCTATCATCTGGATGATGATATATATAATTAAA
TAAAAAGATGGGTACAGTTATTACCTATCAATTATAAGAGTGTCAATTTA
GTTCAGTTCACTTACAAAAATCTCTTATAAAAGAGATTATCTTTGTTTGC
GTTCATGTACTTTGTCTTCTTTAATTAATAAATAAAACTATTGTGTATCA
TTGTGTTGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATATCGGCC
GGGGATGTTGGATTTGTTACATATTATTGAACGCTGCAATCAATAGCAAG
CTAATTTCTCGCGAGATCTAAAAGCAATATCGAATAATTCATCTTTTGCG
CAGTGAAGATATGGAGACTGAGAGGAAGAAACAGGAACTGAGGCATCTTG
GATTTATGAGGATAGCCGCGATTAAGGCTCTGGTGTGCGTGTCGAGTTTG
TACGACTACGCAAAACGCAACTCGGGGCCGCTACGCTCGCCGGTTGGGAC
TGTCGAAAGCGCCGTGACTGCCGTCGTGGGACCTGTTTATCAGAAATTCA
AGGGCGTGCCTGATGATCTCCTCGTTTTTCTTGATAAGAAGGTGGATGAT
GCTTCACGCAAGTTTGACGAGCACGCTCCCCCTTTGGCCAAGCGGGTTGC
CAGCCAAGTACATAGTCTAATTGAAACAGCATCACAGAAAGCTCAAAAGC
TTGTGATTGAGGCC
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