FC868685

Overview
NameFC868685
Unique NameFC868685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1007..1710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.180e-107
Identity = 183/229 (79.91%), Postives = 210/229 (91.70%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAV 702
            KINWMKAGILESD VLTVSP+YAQE++SG ++GVELDN IRKTGI GI+NGMDVQEWNP+TDKYI + YDA+TVMDAKPLLKEALQAEVGLPVDRN+P+IGFIGRLEEQKGSDI  AAI   ++ NVQI++LGTGKK  EKQ+E LE+LYP+KARGVAKFN+PLAHMI AGADF+L+PSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV+EG+TGFQMG+  V+C+ +
Sbjct:  303 KINWMKAGILESDRVLTVSPYYAQEVISGVERGVELDNFIRKTGIAGIINGMDVQEWNPVTDKYIDIHYDATTVMDAKPLLKEALQAEVGLPVDRNVPLIGFIGRLEEQKGSDIFVAAISQLVEHNVQIVILGTGKKKFEKQIEHLEVLYPDKARGVAKFNVPLAHMITAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVKEGYTGFQMGALHVECDKI 531          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 372.859 bits (956), Expect = 9.477e-103
Identity = 180/229 (78.60%), Postives = 203/229 (88.65%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAV 702
            KINWMKAGILESD V+TVSP+YA ELVSG +KGVELDN+I KT I GIVNGMD QEWNP TDK+I   YD +TVMDAKPLLKEALQA VGLPVD+NIPVIGFIGRLEEQKGSDIL AAI  F+  +VQII+LGTGKK  E+Q+++LE+LYP+KARGVAKFN+PLAHMI AGADF+L+PSRFEPCGLIQLHAMRYGT+PI ASTGGLVDTV EGFTGF MG+F+V+C  V
Sbjct:  303 KINWMKAGILESDRVVTVSPYYAMELVSGAEKGVELDNVIAKTSITGIVNGMDTQEWNPATDKHIDTNYDITTVMDAKPLLKEALQAAVGLPVDKNIPVIGFIGRLEEQKGSDILVAAISKFVGLDVQIIILGTGKKKFEQQIQELEVLYPDKARGVAKFNVPLAHMITAGADFMLVPSRFEPCGLIQLHAMRYGTIPICASTGGLVDTVTEGFTGFHMGAFNVECATV 531          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 8.023e-102
Identity = 180/229 (78.60%), Postives = 204/229 (89.08%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAV 702
            KINWMKAGILES  V+TVSP+YAQELVS  DKGVELD+++RKT I GIVNGMD QEWNP TDKY  VKYD +TVMDAKPLLKEALQA VGLPVD+ IP+IGFIGRLEEQKGSDIL AAI  FI  +VQI+VLGTGKK  E+++EQLE+LYP KA+GVAKFN+PLAHMI AGADF+L+PSRFEPCGLIQLHAMRYGTVPI ASTGGLVDTV+EG+TGF MG+F+V+C+ V
Sbjct:  302 KINWMKAGILESHRVVTVSPYYAQELVSAVDKGVELDSVLRKTCITGIVNGMDTQEWNPATDKYTDVKYDITTVMDAKPLLKEALQAAVGLPVDKKIPLIGFIGRLEEQKGSDILVAAIHKFIGLDVQIVVLGTGKKEFEQEIEQLEVLYPNKAKGVAKFNVPLAHMITAGADFMLVPSRFEPCGLIQLHAMRYGTVPICASTGGLVDTVKEGYTGFHMGAFNVECDVV 530          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 362.459 bits (929), Expect = 1.281e-99
Identity = 179/229 (78.17%), Postives = 199/229 (86.90%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAV 702
            KINWMKAGI E+D V TVSP+YA+ELVS   KGVELDN IR  GI GI NGMD QEWNP TDKY+ VKYD +TVM AKPLLKEALQA VGLPVDRNIP+IGFIGRLEEQKGSDIL AAI  FI  +VQI++LGTGKK  E+Q+EQLE++YP+KARGVAKFN+PLAHMI AGADF+LIPSRFEPCGLIQLHAMRYGT  I ASTGGLVDTV+EG+TGF MG+F+VDCE V
Sbjct:  303 KINWMKAGIREADRVFTVSPNYAKELVSCVSKGVELDNHIRDCGITGICNGMDTQEWNPATDKYLAVKYDITTVMQAKPLLKEALQAAVGLPVDRNIPLIGFIGRLEEQKGSDILYAAISKFISMDVQILILGTGKKKFEQQIEQLEVMYPDKARGVAKFNVPLAHMITAGADFMLIPSRFEPCGLIQLHAMRYGTPCICASTGGLVDTVKEGYTGFHMGAFNVDCETV 531          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: SSG1_PEA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.045e-97
Identity = 176/233 (75.54%), Postives = 197/233 (84.55%), Query Frame = 1
Query:    4 CERFKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAV 702
            CE  KINWMKAGILESD V TVSPHYA+EL+SGED+GVELDNIIR TGI GIVNGMD +EW+P TD+YI V Y+ +TV +AKPLLK  LQAE+GLPVD +IP+IGFIGRLEEQKGSDIL  AI  F  ENVQI+VLGTGKK MEKQ+E LE  YP KA G+ KFN PLAH IIAGADFI+IPSRFEPCGL+QLHAM YGTVPIV+STGGLVDTV+EG+TGF  G F V+CE V
Sbjct:  294 CEGKKINWMKAGILESDQVFTVSPHYAKELISGEDRGVELDNIIRSTGIIGIVNGMDNREWSPQTDRYIDVHYNETTVTEAKPLLKGTLQAEIGLPVDSSIPLIGFIGRLEEQKGSDILVEAIAKFADENVQIVVLGTGKKIMEKQIEVLEEKYPGKAIGITKFNSPLAHKIIAGADFIVIPSRFEPCGLVQLHAMPYGTVPIVSSTGGLVDTVKEGYTGFHAGPFDVECEDV 526          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 7.273e-95
Identity = 168/229 (73.36%), Postives = 195/229 (85.15%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAV 702
            KINWMKA ILE+  VLTVSP+YAQEL+SG D+GVEL   +R   + GI+NGMDVQEWNP TDKYI +KYD +TV DAKPL+KEALQA VGLPVDR++PVIGFIGRLEEQKGSDIL  AI  F+  NVQ+++LGTGKK ME Q+ +LE  +P KA GVAKFN+PLAHMI AGADFI++PSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV++G+TGF +G F+V CE V
Sbjct:  305 KINWMKAAILEAHRVLTVSPYYAQELISGVDRGVELHKYLRMKTVSGIINGMDVQEWNPSTDKYIDIKYDITTVTDAKPLIKEALQAAVGLPVDRDVPVIGFIGRLEEQKGSDILVEAISKFMGLNVQMVILGTGKKKMEAQILELEEKFPGKAVGVAKFNVPLAHMITAGADFIIVPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVKDGYTGFHIGRFNVKCEVV 533          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 5.394e-90
Identity = 165/230 (71.74%), Postives = 190/230 (82.61%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK-GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAV 702
            KINWMKAGI E D+VLTVSPHY +EL SG +KGVELD ++R   ++ GIVNGMDV +WNP TDKYI VKY+A+TV  A+ L KE LQAEVGL VD +IPVI FIGRLEEQKGSDIL AA P F++ENVQIIVLGTGKK ME++L  LE+ YP+ ARG+AKFN+PLAHM+ AGADFI+IPSRFEPCGLIQL  M YG VPI +STGGLVDTV EG TGF MGSF+V+ E V
Sbjct:  259 KINWMKAGITECDVVLTVSPHYVKELTSGPEKGVELDGVLRTKPLETGIVNGMDVIDWNPATDKYISVKYNATTVAQARALNKEILQAEVGLSVDSSIPVIVFIGRLEEQKGSDILIAASPEFVEENVQIIVLGTGKKKMEEELMLLEVKYPQNARGIAKFNVPLAHMMFAGADFIIIPSRFEPCGLIQLQGMSYGVVPICSSTGGLVDTVREGVTGFHMGSFNVEFETV 488          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 6.594e-88
Identity = 160/229 (69.87%), Postives = 184/229 (80.35%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAV 702
            KINWMKAGILESD VLTVSP+YA+EL+SG  +G ELDNI+R TGI GIVNGMDV EW+P  DKYI  KYDA+T ++AK L KEALQAE GLPVDR +P+I FIGRLEEQKG D++AAAIP  ++ENVQI++LGTGKK  EK L+ +E  YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL  MRYGT    ASTGGLVDTV EG TGF MG  SVDC+ V
Sbjct:  301 KINWMKAGILESDRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITTKYDATTAIEAKALNKEALQAEAGLPVDRKVPLIAFIGRLEEQKGPDVMAAAIPELMQENVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVV 529          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSJ (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.274e-87
Identity = 159/229 (69.43%), Postives = 184/229 (80.35%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAV 702
            KINWMKAGILE+D VLTVSP+YA+EL+SG  +G ELDNI+R TGI GIVNGMDV EW+P  DKYI  KYDA+T ++AK L KEALQAE GLPVDR IP+I FIGRLEEQKG D++AAAIP  ++E+VQI++LGTGKK  EK L+ +E  YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL  MRYGT    ASTGGLVDTV EG TGF MG  SVDC+ V
Sbjct:  304 KINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVV 532          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2)

HSP 1 Score: 320.857 bits (821), Expect = 4.274e-87
Identity = 159/229 (69.43%), Postives = 184/229 (80.35%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAV 702
            KINWMKAGILE+D VLTVSP+YA+EL+SG  +G ELDNI+R TGI GIVNGMDV EW+P  DKYI  KYDA+T ++AK L KEALQAE GLPVDR IP+I FIGRLEEQKG D++AAAIP  ++E+VQI++LGTGKK  EK L+ +E  YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL  MRYGT    ASTGGLVDTV EG TGF MG  SVDC+ V
Sbjct:  304 KINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVV 532          
The following BLAST results are available for this feature:
BLAST of FC868685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
SSG1_MANES2.180e-10779.91Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ANTMA9.477e-10378.60Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SOLTU8.023e-10278.60Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_IPOBA1.281e-9978.17Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_PEA2.045e-9775.54Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ARATH7.273e-9573.36Probable granule-bound starch synthase 1, chloropl... [more]
SSG1B_HORVU5.394e-9071.74Granule-bound starch synthase 1b, chloroplastic/am... [more]
SSG1_ORYSA6.594e-8869.87Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSJ4.274e-8769.43Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSI4.274e-8769.43Granule-bound starch synthase 1, chloroplastic/amy... [more]

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Properties
Property NameValue
Genbank descriptionC31003E03EF AbioticL1 Citrus clementina cDNA clone C31003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868685 ID=FC868685; Name=FC868685; organism=Citrus clementina; type=EST; length=704bp
ACCTGTGAGAGGTTCAAAATCAACTGGATGAAAGCTGGAATATTAGAATC
AGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTG
GTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATT
AAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGA
CAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGC
CTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGA
AATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTC
AGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGA
TAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAG
TTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATAT
TCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAA
GCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGA
ACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGA
AGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTG
TGGA
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