FC868690

Overview
NameFC868690
Unique NameFC868690
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14120 contig Ccv1_Contig14120:366..1111. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868690 vs. ExPASy Swiss-Prot
Match: NOTUM_MOUSE (Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12
Identity = 57/222 (25.68%), Postives = 100/222 (45.05%), Query Frame = 1
Query:   37 SKKTRLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFP----VGTKVKCFADAGYFINAKDVSGASHIEQF-YAQVVATHGSAKH----LPASCTSRLSPG---LCFFPQYMARQITTPLFIINAAYDSWQ--IKNILAPGVADPHGTW 660
            S   RL SSK        +G+LS++ + NP ++N N + + YC    ++G     +  N   F G+ + Q V+ +L+ KG+  A+  +L+G SAGG   +L+ D    L         +V+  AD+G+F++ K    +  I+    A   A     ++    +P  C  +   G    CFF   +   +  P+F++   +D  Q  + N+   G     G W
Sbjct:  148 STMRRLMSSKDWPHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKSDKNEYAFMGSLIIQEVVRELLGKGLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYPSIQVRGLADSGWFLDNKQYRRSDCIDTINCAPTDAIRRGIRYWSGMVPERCQRQFKEGEEWNCFFGYKVYPTLRCPVFVVQWLFDEAQLTVDNVHLTGQPVQEGQW 368          
BLAST of FC868690 vs. ExPASy Swiss-Prot
Match: NOTUM_HUMAN (Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 50/201 (24.88%), Postives = 95/201 (47.26%), Query Frame = 1
Query:   49 RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDN----FRALFPVGTKVKCFADAGYFINAKDVSGASHIEQFY-AQVVATHGSAKH----LPASCTSRLSPGL---CFFPQYMARQITTPLFIINAAYDSWQI 615
            RL SS+   +    +G+LS++ + NP ++N N + + YC    ++G   + +  N   F GA + Q V+ +L+ +G+  A+  +L+G SAGG   +L+ D        L     +V+  AD+G+F++ K       ++    A   A     ++    +P  C  +   G    CFF   +   +  P+F++   +D  Q+
Sbjct:  145 RLMSSRDWPRTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSG-ASSKSEKNEYAFMGALIIQEVVRELLGRGLSGAKVLLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRGLADSGWFLDNKQYRHTDCVDTITCAPTEAIRRGIRYWNGVVPERCRRQFQEGEEWNCFFGYKVYPTLRCPVFVVQWLFDEAQL 344          
The following BLAST results are available for this feature:
BLAST of FC868690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOTUM_MOUSE1.712e-1225.68Protein notum homolog OS=Mus musculus GN=Notum PE=... [more]
NOTUM_HUMAN3.228e-1124.88Protein notum homolog OS=Homo sapiens GN=NOTUM PE=... [more]
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Properties
Property NameValue
Genbank descriptionC31003E09EF AbioticL1 Citrus clementina cDNA clone C31003E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868690 ID=FC868690; Name=FC868690; organism=Citrus clementina; type=EST; length=744bp
GGAGAGAGGTGCAACAATGTCACCCCTTGTCTTGAAAGTAAGAAAACCCG
TTTAGGTTCATCTAAGCAAATGGTCAAGGTAGTTGCTTTCTCTGGGATGC
TGAGCAACAAGCAAAAATTTAACCCAGACTTCTACAATTGGAATAGAATC
AAGGTTAGATACTGTGATGGTGCATCGTTTACTGGAGATGTGGAGGCTGT
CAATCCAGCAAATAACCTTCACTTCAGAGGAGCAAGGGTTTTTCAAGCTG
TCATGGAGGATCTAATGGCTAAAGGGATGAAAAATGCTCAAAATGCTGTT
CTTTCTGGCTGCTCAGCTGGGGGGTTGACTTCAATTTTGCATTGTGATAA
CTTCCGAGCTCTCTTCCCTGTGGGTACTAAAGTAAAATGCTTTGCAGATG
CTGGTTATTTTATCAACGCGAAGGATGTTTCTGGAGCAAGTCACATTGAG
CAGTTTTATGCTCAAGTGGTCGCAACACATGGATCAGCTAAGCATTTGCC
AGCATCCTGCACTTCAAGATTGAGCCCAGGACTGTGTTTCTTCCCACAAT
ACATGGCACGGCAAATAACAACACCGCTATTTATCATAAATGCGGCCTAT
GATTCATGGCAGATAAAGAACATTTTGGCACCAGGTGTTGCTGATCCACA
TGGAACTTGGCATAGCTGCAAGCTTGATATAACAACTGCTCACCTACTCA
GCTGCAAACAATGCAAGTTTCAGGACACAATTCTTAAATGCATG
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