FC868692

Overview
NameFC868692
Unique NameFC868692
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14283 contig Ccv1_Contig14283:71..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868692 vs. ExPASy Swiss-Prot
Match: CHLI_SOYBN (Magnesium-chelatase subunit chlI, chloroplastic OS=Glycine max GN=CHLI PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.466e-83
Identity = 166/216 (76.85%), Postives = 177/216 (81.94%), Query Frame = 2
Query:   32 MASVLGTRSSSAILASRPLXXXXXXXXXXXXXXXXXXGQNYGRRFYGGIGIEEKMGRALFAVTNVATEVNSVEQAQK-RSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK 676
            MAS LGT SS A+L SR                    GQNYGR+FYGGIGI    GRA  +VTNVATEVNSVEQAQ   SKESQRPVYPF+AIVGQ+EMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLP IKVV GDPYNSDP+DPE MG+EVRE V++GEELS+  +KINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK
Sbjct:    1 MASALGT-SSIAVLPSR--YFSSSSSKPSIHTLSLTSGQNYGRKFYGGIGIHGIKGRAQLSVTNVATEVNSVEQAQSIASKESQRPVYPFSAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVVAGDPYNSDPQDPEFMGVEVRERVLQGEELSVVLTKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK 213          
BLAST of FC868692 vs. ExPASy Swiss-Prot
Match: CHLI_TOBAC (Magnesium-chelatase subunit chlI, chloroplastic OS=Nicotiana tabacum GN=CHLI PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.595e-72
Identity = 148/220 (67.27%), Postives = 172/220 (78.18%), Query Frame = 2
Query:   32 MASVLGTRSSSA--ILASRPLXXXXXXXXXXXXXXXXXXGQNYGRRFYGGIGIEEKMGRALF--AVTNVATEVNSVE-QAQKRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK 676
            MAS+LGT SS+A  ILAS PL                  GQ+ GR+FYGGI +  K GR+ F  A++NVATE+N ++ + +   +ESQRPVYPF AIVGQ+EMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLP IKV+ GDP+NSDP+D E M  EVR+ +  G++L I+ +KINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK
Sbjct:    1 MASLLGTSSSAAAAILASTPLSSRSCKPAVFSLFPSS--GQSQGRKFYGGIRVPVKKGRSQFHVAISNVATEINLLKNRVRNLLEESQRPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVISGDPFNSDPDDQEVMSAEVRDKLRSGQQLPISRTKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK 218          
BLAST of FC868692 vs. ExPASy Swiss-Prot
Match: CHLI_ARATH (Magnesium-chelatase subunit chlI, chloroplastic OS=Arabidopsis thaliana GN=CHLI PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.394e-70
Identity = 149/219 (68.04%), Postives = 165/219 (75.34%), Query Frame = 2
Query:   32 MASVLGTRSSSAILASRPLXXXXXXXXXXXXXXXXXXGQNYGRRFYGGIGIEEKMGRALF--AVTNVATEVNSVEQAQKR--SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK 676
            MAS+LGT SSSAI AS  L                  G+ +G +   GI I  K  R+ +  +V NVATE+NS EQ   +  SK+S RPVYPF AIVGQ+EMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLP I VV GDPYNSDP DPE MG+EVRE V KGE++ +  +KINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK
Sbjct:    1 MASLLGT-SSSAIWASPSLSSPSSKPSSSPICFRP--GKLFGSKLNAGIQIRPKKNRSRYHVSVMNVATEINSTEQVVGKFDSKKSARPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEINVVAGDPYNSDPIDPEFMGVEVRERVEKGEQVPVIATKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK 216          
BLAST of FC868692 vs. ExPASy Swiss-Prot
Match: CHLI_CHLRE (Magnesium-chelatase subunit chlI, chloroplastic OS=Chlamydomonas reinhardtii GN=CHLI PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.160e-56
Identity = 110/158 (69.62%), Postives = 124/158 (78.48%), Query Frame = 2
Query:  203 ALFAVTNVATEVNSVEQAQKRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK 676
            AL      ATEV + E    +     RP++PFTAIVGQ+EMKL L+LNVIDPKIGGVMIMGDRGTGKSTT+R+L DLLP ++VV  DP+NSDP DPE M  EVR  V  GE+L ++  KI MVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK
Sbjct:   50 ALLVRAAAATEVKAAEGRTGKELGQARPIFPFTAIVGQDEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALADLLPEMQVVANDPFNSDPTDPELMSEEVRNRVKAGEQLPVSSKKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK 207          
BLAST of FC868692 vs. ExPASy Swiss-Prot
Match: CHLI_NEPOL (Magnesium-chelatase subunit chlI OS=Nephroselmis olivacea GN=chlI PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.792e-55
Identity = 110/137 (80.29%), Postives = 118/137 (86.13%), Query Frame = 2
Query:  266 SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK 676
            + E  RPV+PFTAIVGQEEMKL LLLNVIDPKIGGVMIMGDRGTGKSTTVR+LVDLLP I+VV  DP+NS P DPE M  EVRE V +GE +  T +KI MVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK
Sbjct:    7 TSEQARPVFPFTAIVGQEEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTVRALVDLLPEIEVVENDPFNSHPYDPELMSDEVREKVHRGESIRTTTTKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK 143          
BLAST of FC868692 vs. ExPASy Swiss-Prot
Match: CHLI_CHLVU (Magnesium-chelatase subunit chlI OS=Chlorella vulgaris GN=chlI PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.057e-55
Identity = 109/139 (78.42%), Postives = 120/139 (86.33%), Query Frame = 2
Query:  260 KRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK 676
            + S E  RPV+PFTAIVGQEEMKL L+LNVIDPKIGGVMIMGDRGTGKSTTVR+LVDLLP I+VV  DP+NSDP+DPE M  EVR  + + E + IT  KI+MVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK
Sbjct:    6 ENSLEQARPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTVRALVDLLPEIQVVADDPFNSDPKDPELMSQEVRGRLQRKETVPITTKKISMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK 144          
BLAST of FC868692 vs. ExPASy Swiss-Prot
Match: CHLI_MESVI (Magnesium-chelatase subunit chlI OS=Mesostigma viride GN=chlI PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.191e-53
Identity = 102/147 (69.39%), Postives = 122/147 (82.99%), Query Frame = 2
Query:  236 VNSVEQAQKRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK 676
            +++++  +  +K  +RPVYPFTAIVGQEEMKL L+LNVIDP IGGVMIMGDRGTGKSTT+R+LVDLLP I+VV  DP+NSDP DP+ M  EVRE +   +E+    +KI +VDLPLGATEDRVCGTIDIE+AL EGVKAFEPGLLAK
Sbjct:    1 MSTIDLIKNVTKREERPVYPFTAIVGQEEMKLALILNVIDPDIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVTNDPFNSDPRDPDLMSDEVREKINNKQEVPTIKTKIKIVDLPLGATEDRVCGTIDIERALNEGVKAFEPGLLAK 147          
BLAST of FC868692 vs. ExPASy Swiss-Prot
Match: CHLI_ANASP (Magnesium-chelatase subunit chlI OS=Anabaena sp. (strain PCC 7120) GN=chlI PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.881e-53
Identity = 103/134 (76.87%), Postives = 114/134 (85.07%), Query Frame = 2
Query:  275 SQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK 676
            ++R V+PFTAIVGQEEMKL LLLNVIDPKIGGVMIMGDRGTGKSTT+R+L DLLP I VV  DP+NSDP DP+ M  EVR+    G E+ I F K+ MVDLPLGATEDRVCGTIDIEKAL+EGVKAFEPGLLAK
Sbjct:   11 ARRVVFPFTAIVGQEEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTIRALADLLPEIPVVANDPFNSDPSDPDLMSDEVRQKSGTGAEIPIEFKKVQMVDLPLGATEDRVCGTIDIEKALSEGVKAFEPGLLAK 144          
BLAST of FC868692 vs. ExPASy Swiss-Prot
Match: CHLI_SYNY3 (Magnesium-chelatase subunit chlI OS=Synechocystis sp. (strain PCC 6803) GN=chlI PE=3 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 9.205e-52
Identity = 103/135 (76.30%), Postives = 114/135 (84.44%), Query Frame = 2
Query:  272 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK 676
            +++R V+PFTAIVGQ+EMKL LLLNVIDPKIGGVMIMGDRGTGKSTT+R+L DLLP I+VV  DP+NS P DPE M  EVR  V   E LSI   K+ MVDLPLGATEDRVCGTIDIEKAL+EGVKAFEPGLLAK
Sbjct:   10 KTRRVVFPFTAIVGQDEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTIRALADLLPEIEVVANDPFNSSPSDPEMMSEEVRIRVDSQEPLSIVKKKVTMVDLPLGATEDRVCGTIDIEKALSEGVKAFEPGLLAK 144          
BLAST of FC868692 vs. ExPASy Swiss-Prot
Match: CHLI_CYAPA (Magnesium-chelatase subunit chlI OS=Cyanophora paradoxa GN=chlI PE=3 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.051e-51
Identity = 98/136 (72.06%), Postives = 113/136 (83.09%), Query Frame = 2
Query:  269 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK 676
            K + RP++PFTAIVGQEEMKL LLLN++DPKIGGVMIMGDRGTGKSTT+R+L DLLP I +V  DP+NS P D E M   VR+    GEE+S+   K+ M+DLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLA+
Sbjct:    2 KNNNRPIFPFTAIVGQEEMKLALLLNIVDPKIGGVMIMGDRGTGKSTTIRALADLLPEIDIVANDPFNSHPTDIELMSDNVRQLKENGEEISLIQKKVPMIDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAQ 137          
The following BLAST results are available for this feature:
BLAST of FC868692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CHLI_SOYBN3.466e-8376.85Magnesium-chelatase subunit chlI, chloroplastic OS... [more]
CHLI_TOBAC3.595e-7267.27Magnesium-chelatase subunit chlI, chloroplastic OS... [more]
CHLI_ARATH4.394e-7068.04Magnesium-chelatase subunit chlI, chloroplastic OS... [more]
CHLI_CHLRE6.160e-5669.62Magnesium-chelatase subunit chlI, chloroplastic OS... [more]
CHLI_NEPOL1.792e-5580.29Magnesium-chelatase subunit chlI OS=Nephroselmis o... [more]
CHLI_CHLVU3.057e-5578.42Magnesium-chelatase subunit chlI OS=Chlorella vulg... [more]
CHLI_MESVI2.191e-5369.39Magnesium-chelatase subunit chlI OS=Mesostigma vir... [more]
CHLI_ANASP4.881e-5376.87Magnesium-chelatase subunit chlI OS=Anabaena sp. (... [more]
CHLI_SYNY39.205e-5276.30Magnesium-chelatase subunit chlI OS=Synechocystis ... [more]
CHLI_CYAPA2.051e-5172.06Magnesium-chelatase subunit chlI OS=Cyanophora par... [more]

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Properties
Property NameValue
Genbank descriptionC31003E12EF AbioticL1 Citrus clementina cDNA clone C31003E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868692 ID=FC868692; Name=FC868692; organism=Citrus clementina; type=EST; length=678bp
ATAACAGTAACACTTACATTTGCGCACGGGCATGGCGTCCGTGTTAGGAA
CTCGTTCTTCCTCTGCAATCTTGGCTTCTCGCCCTCTCTCTTTTCCAGCA
TCAAACTCAAAGTCTGCCATCTCCTCTCTCTCCTTAAACCCCGGGCAGAA
TTATGGAAGGAGGTTTTATGGGGGGATTGGGATTGAAGAAAAGATGGGGC
GGGCTCTGTTTGCAGTTACCAATGTTGCCACTGAGGTTAACTCTGTTGAG
CAGGCCCAGAAGAGATCCAAGGAAAGCCAGAGGCCGGTGTATCCATTTAC
TGCAATAGTGGGACAGGAAGAGATGAAATTGTGCCTCTTGTTAAATGTGA
TTGATCCCAAAATTGGTGGTGTTATGATTATGGGTGATAGAGGAACGGGG
AAATCCACCACTGTTAGGTCCTTGGTAGATTTACTCCCCGTAATCAAGGT
AGTTGTCGGTGACCCATATAACTCAGATCCAGAAGATCCAGAGGCCATGG
GTATTGAAGTCAGAGAGTCTGTCGTGAAAGGGGAGGAGCTCTCCATTACA
TTCAGTAAAATCAACATGGTTGATTTGCCATTGGGTGCTACAGAAGACAG
GGTCTGTGGGACGATTGACATTGAGAAAGCTCTAACGGAGGGTGTCAAAG
CATTTGAGCCTGGCCTTCTTGCTAAAGC
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