FC868694
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_NEIMB (30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B GN=rpsA PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.134e-16 Identity = 42/132 (31.82%), Postives = 76/132 (57.58%), Query Frame = 2 Query: 47 IYDQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP 442 + D +K F G++I V+ D+K ++VS R L E++++L+ L+ G ++K +K IT +G FV++ G+ L+H T+++W P+ ++GQ VEAKV + D +R+ L +K++ DP Sbjct: 136 LVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAVLEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP 267
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAHJ (30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.719e-15 Identity = 45/139 (32.37%), Postives = 78/139 (56.12%), Query Frame = 2 Query: 83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRL 499 F GQ I + V D + ++I+S + E+ E KK SL+ L GD++K + ++T FG FV++ GV L+H +E+S + P +GQ V+ KV ++ ERI LS+K+ P P ++++ D ++G++ Sbjct: 149 FDGQTIRIKVEELDPENNRVILSRKAVEQAENDVKKASLLESLNAGDVIKGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPF-ESIKGQFHEDDVIEGKV 286
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAAW (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MW2) GN=rpsA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14 Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 2 Query: 83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPL---------TDALESVV 469 F GQ I + V D + ++I+S + E+EE KK L+ L GD++ + ++T FG F+++ GV L+H +E+S + P IGQ V+ K+ +D ERI LS+K+ P P D +E VV Sbjct: 149 FDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVV 286
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAAS (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MSSA476) GN=rpsA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14 Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 2 Query: 83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPL---------TDALESVV 469 F GQ I + V D + ++I+S + E+EE KK L+ L GD++ + ++T FG F+++ GV L+H +E+S + P IGQ V+ K+ +D ERI LS+K+ P P D +E VV Sbjct: 149 FDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVV 286
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAAN (30S ribosomal protein S1 OS=Staphylococcus aureus (strain N315) GN=rpsA PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14 Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 2 Query: 83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPL---------TDALESVV 469 F GQ I + V D + ++I+S + E+EE KK L+ L GD++ + ++T FG F+++ GV L+H +E+S + P IGQ V+ K+ +D ERI LS+K+ P P D +E VV Sbjct: 149 FDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVV 286
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAAM (30S ribosomal protein S1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsA PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14 Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 2 Query: 83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPL---------TDALESVV 469 F GQ I + V D + ++I+S + E+EE KK L+ L GD++ + ++T FG F+++ GV L+H +E+S + P IGQ V+ K+ +D ERI LS+K+ P P D +E VV Sbjct: 149 FDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVV 286
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAAC (30S ribosomal protein S1 OS=Staphylococcus aureus (strain COL) GN=rpsA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14 Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 2 Query: 83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPL---------TDALESVV 469 F GQ I + V D + ++I+S + E+EE KK L+ L GD++ + ++T FG F+++ GV L+H +E+S + P IGQ V+ K+ +D ERI LS+K+ P P D +E VV Sbjct: 149 FDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVV 286
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAAR (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MRSA252) GN=rpsA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14 Identity = 42/120 (35.00%), Postives = 67/120 (55.83%), Query Frame = 2 Query: 83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP 442 F GQ I + V D + ++I+S + E+EE KK L+ L GD++ + ++T FG F+++ GV L+H +E+S + P IGQ V+ K+ +D ERI LS+K+ P P Sbjct: 149 FDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTP 268
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAS1 (30S ribosomal protein S1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.534e-14 Identity = 44/130 (33.85%), Postives = 69/130 (53.08%), Query Frame = 2 Query: 83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVG 472 F GQ + + V D ++I+S + E E EKK L+ L GD+++ + ++T FG FV++ GV L+H +E+S + P IG+ V K+ +D ERI LS+K+ P P ES+ G Sbjct: 149 FEGQVLKLKVEELDPANNRVILSRKAVEALENAEKKDELLESLNEGDVIEGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDTLPSP----FESIKG 274
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1H_BACC1 (30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC 10987) GN=BCE_1625 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.534e-14 Identity = 42/131 (32.06%), Postives = 73/131 (55.73%), Query Frame = 2 Query: 83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGG 475 + G+ + V +V DR+ ++I+S + EL KK+ ++ L+ GD+V+ ++++T FG FV V GV L+H +++S + P+ + GQ V+ KV +D +RI LS+K P P + V G Sbjct: 144 YKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAGEVKAG 274 The following BLAST results are available for this feature:
BLAST of FC868694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868694 ID=FC868694; Name=FC868694; organism=Citrus clementina; type=EST; length=721bpback to top |