FC868694

Overview
NameFC868694
Unique NameFC868694
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3414 contig Ccv1_Contig3414:812..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_NEIMB (30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B GN=rpsA PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.134e-16
Identity = 42/132 (31.82%), Postives = 76/132 (57.58%), Query Frame = 2
Query:   47 IYDQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP 442
            + D   +K    F G++I   V+  D+K   ++VS R      L E++++L+  L+ G ++K  +K IT +G FV++ G+  L+H T+++W     P+   ++GQ VEAKV + D   +R+ L +K++  DP
Sbjct:  136 LVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAVLEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP 267          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAHJ (30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.719e-15
Identity = 45/139 (32.37%), Postives = 78/139 (56.12%), Query Frame = 2
Query:   83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRL 499
            F GQ I + V   D +  ++I+S +  E+ E   KK SL+  L  GD++K  + ++T FG FV++ GV  L+H +E+S +    P     +GQ V+ KV  ++   ERI LS+K+  P P  ++++      D ++G++
Sbjct:  149 FDGQTIRIKVEELDPENNRVILSRKAVEQAENDVKKASLLESLNAGDVIKGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPF-ESIKGQFHEDDVIEGKV 286          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAAW (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MW2) GN=rpsA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 2
Query:   83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPL---------TDALESVV 469
            F GQ I + V   D +  ++I+S +  E+EE   KK  L+  L  GD++   + ++T FG F+++ GV  L+H +E+S +    P     IGQ V+ K+  +D   ERI LS+K+  P P           D +E VV
Sbjct:  149 FDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVV 286          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAAS (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MSSA476) GN=rpsA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 2
Query:   83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPL---------TDALESVV 469
            F GQ I + V   D +  ++I+S +  E+EE   KK  L+  L  GD++   + ++T FG F+++ GV  L+H +E+S +    P     IGQ V+ K+  +D   ERI LS+K+  P P           D +E VV
Sbjct:  149 FDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVV 286          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAAN (30S ribosomal protein S1 OS=Staphylococcus aureus (strain N315) GN=rpsA PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 2
Query:   83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPL---------TDALESVV 469
            F GQ I + V   D +  ++I+S +  E+EE   KK  L+  L  GD++   + ++T FG F+++ GV  L+H +E+S +    P     IGQ V+ K+  +D   ERI LS+K+  P P           D +E VV
Sbjct:  149 FDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVV 286          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAAM (30S ribosomal protein S1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsA PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 2
Query:   83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPL---------TDALESVV 469
            F GQ I + V   D +  ++I+S +  E+EE   KK  L+  L  GD++   + ++T FG F+++ GV  L+H +E+S +    P     IGQ V+ K+  +D   ERI LS+K+  P P           D +E VV
Sbjct:  149 FDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVV 286          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAAC (30S ribosomal protein S1 OS=Staphylococcus aureus (strain COL) GN=rpsA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 2
Query:   83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPL---------TDALESVV 469
            F GQ I + V   D +  ++I+S +  E+EE   KK  L+  L  GD++   + ++T FG F+++ GV  L+H +E+S +    P     IGQ V+ K+  +D   ERI LS+K+  P P           D +E VV
Sbjct:  149 FDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVV 286          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAAR (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MRSA252) GN=rpsA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14
Identity = 42/120 (35.00%), Postives = 67/120 (55.83%), Query Frame = 2
Query:   83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP 442
            F GQ I + V   D +  ++I+S +  E+EE   KK  L+  L  GD++   + ++T FG F+++ GV  L+H +E+S +    P     IGQ V+ K+  +D   ERI LS+K+  P P
Sbjct:  149 FDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTP 268          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAS1 (30S ribosomal protein S1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.534e-14
Identity = 44/130 (33.85%), Postives = 69/130 (53.08%), Query Frame = 2
Query:   83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVG 472
            F GQ + + V   D    ++I+S +  E  E  EKK  L+  L  GD+++  + ++T FG FV++ GV  L+H +E+S +    P     IG+ V  K+  +D   ERI LS+K+  P P     ES+ G
Sbjct:  149 FEGQVLKLKVEELDPANNRVILSRKAVEALENAEKKDELLESLNEGDVIEGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDTLPSP----FESIKG 274          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1H_BACC1 (30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC 10987) GN=BCE_1625 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.534e-14
Identity = 42/131 (32.06%), Postives = 73/131 (55.73%), Query Frame = 2
Query:   83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGG 475
            + G+ + V +V  DR+  ++I+S +     EL  KK+  ++ L+ GD+V+  ++++T FG FV V GV  L+H +++S +    P+   + GQ V+ KV  +D   +RI LS+K   P P  +    V  G
Sbjct:  144 YKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAGEVKAG 274          
The following BLAST results are available for this feature:
BLAST of FC868694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RS1_NEIMB3.134e-1631.8230S ribosomal protein S1 OS=Neisseria meningitidis... [more]
RS1_STAHJ7.719e-1532.3730S ribosomal protein S1 OS=Staphylococcus haemoly... [more]
RS1_STAAW1.720e-1433.3330S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RS1_STAAS1.720e-1433.3330S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RS1_STAAN1.720e-1433.3330S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RS1_STAAM1.720e-1433.3330S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RS1_STAAC1.720e-1433.3330S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RS1_STAAR2.246e-1435.0030S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RS1_STAS18.534e-1433.8530S ribosomal protein S1 OS=Staphylococcus saproph... [more]
RS1H_BACC18.534e-1432.0630S ribosomal protein S1 homolog OS=Bacillus cereu... [more]

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Properties
Property NameValue
Genbank descriptionC31003F03EF AbioticL1 Citrus clementina cDNA clone C31003F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868694 ID=FC868694; Name=FC868694; organism=Citrus clementina; type=EST; length=721bp
AGAGAGAGAAATTTCCCCAGAATTCAAATTGGATGATCTTCTTAGAATAT
ACGATCAAGAGAAACTGAAATTCTTGTTATCATTCCTTGGCCAGAAAATC
AATGTGAATGTTGTAATGGCTGACCGGAAATTCAGAAAACTTATTGTTTC
TGTGAGACCAAAAGAAAGGGAAGAATTGGTCGAGAAAAAGAGAAGTCTCA
TGGCCAAACTTCGCATTGGAGATATAGTGAAGTGCTGCATTAAGAAGATA
ACTTATTTTGGTGTTTTTGTTGAGGTTGAAGGTGTGCCTGCTTTAATTCA
CCAGACCGAAGTGTCATGGGATGCCACTTTGGACCCGGCATCATACTTCA
AAATTGGGCAGGTTGTGGAGGCAAAAGTTCATCAACTAGATTTTGCACTT
GAGCGCATTTTTCTGTCATTGAAGGAGATTACGCCGGATCCACTGACTGA
TGCCTTGGAGTCTGTGGTTGGTGGTCGTGATCCCTTGGATGGGAGATTGG
AAGCTGCTCAAGCCGATACTGAGTGGGCTGATGTGGAATCTCTTATAAGA
GAACTGCAAAAGGTGGATGGGATTGAGTCTGTATCAAAAGGCCGTTTCTT
TGTAAGCCCTGGTTTAGCTCCGACATTTCAGGTTTATATGTCAACAATGT
TCGAGAATCAGTACAAGTTACTTGCTCGATCAGGGAAAACAAGTGCAGAA
GTAATAGTGCAAGCATCCTTG
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