FC868699

Overview
NameFC868699
Unique NameFC868699
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10305 contig Ccv1_Contig10305:35..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868699 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.710e-84
Identity = 154/193 (79.79%), Postives = 162/193 (83.94%), Query Frame = 2
Query:  146 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 724
            MF++DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKK            +VPFL+LGNKIDIPYAASE+ELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYG+GFKW+SQYIK
Sbjct:    1 MFMIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLASVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWVSQYIK 193          
BLAST of FC868699 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 1.942e-82
Identity = 152/193 (78.76%), Postives = 159/193 (82.38%), Query Frame = 2
Query:  146 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 724
            MF++DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKK             VPFL+LGNKIDIPYAASE+ELRYHLGLSNFTTGKGKV+L  SNVRPLEVFMCSIVRKMGYG+GFKWLSQYIK
Sbjct:    1 MFVIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVDLVGSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193          
BLAST of FC868699 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 6.248e-81
Identity = 149/192 (77.60%), Postives = 156/192 (81.25%), Query Frame = 2
Query:  146 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 721
            MFL DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESK+             VPFL+LGNKIDIPYAASE+ELRYHLGL+NFTTGKGKV L DS VRPLEVFMCSIVRKMGYG+GFKWLSQYI
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALATVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTLGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192          
BLAST of FC868699 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.625e-79
Identity = 144/193 (74.61%), Postives = 155/193 (80.31%), Query Frame = 2
Query:  146 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 724
            MFL+DWFYGVLASLGLWQK+AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG IKFKAFDLGGHQIARRVW                   ERF E+KK            NVPFL+LGNKIDIPYAASE+ELRYHLGL+  TTGKG +NL  +NVRP+EVFMCSIVRKMGYG+GFKW+SQYIK
Sbjct:    1 MFLVDWFYGVLASLGLWQKDAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLTNVPFLILGNKIDIPYAASEDELRYHLGLTGVTTGKGNINLAGTNVRPIEVFMCSIVRKMGYGEGFKWMSQYIK 193          
BLAST of FC868699 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.902e-78
Identity = 147/194 (75.77%), Postives = 154/194 (79.38%), Query Frame = 2
Query:  146 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLT--DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 721
            MFL DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERF+ESKK             VPFL+LGNKID PYAASE+ELRYHLGL+NFTTGKGKV     DS VRPLEVFMCSIVRKMGYG+GFKWLSQYI
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDALATVPFLILGNKIDNPYAASEDELRYHLGLTNFTTGKGKVTTAGGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI 194          
BLAST of FC868699 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.063e-64
Identity = 128/198 (64.65%), Postives = 143/198 (72.22%), Query Frame = 2
Query:  146 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGN---KIDIPYAASEE-ELRYHLGLSNFT-TGKGKVNLTDSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 724
            MFL+DWFYG+LA+LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKK               FL L N   +I+ P     +   RYH+G +  +   +GKVNL DSNVRP+EVFMCSIVR+MGYG+GF+W+SQYIK
Sbjct:    1 MFLVDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLSGWSSLAHCFLFLDNWVTRIEHPICCLRKMNWRYHMGANGASPLARGKVNLADSNVRPVEVFMCSIVRQMGYGEGFRWMSQYIK 198          
BLAST of FC868699 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.690e-55
Identity = 108/192 (56.25%), Postives = 134/192 (69.79%), Query Frame = 2
Query:  146 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 721
            MF+++WF+ +LA LGL  K AKILFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG++KF  +DLGGHQ ARR+W                   ERFAE++             +VPFL+LGNKID P A SEEELR  +GL   TTGKGKV L D  +RP+E+FMCS+V + GYG+GF+W+SQYI
Sbjct:    1 MFIINWFWDILAQLGLAHKNAKILFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLYQ-TTGKGKVPLKD--IRPIEIFMCSVVMRQGYGEGFRWISQYI 189          
BLAST of FC868699 vs. ExPASy Swiss-Prot
Match: SAR1_YARLI (Small COPII coat GTPase SAR1 OS=Yarrowia lipolytica GN=SAR1 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.004e-54
Identity = 110/192 (57.29%), Postives = 130/192 (67.71%), Query Frame = 2
Query:  146 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 721
            M++++WFY VL+SLGLW K AK+LFLGLDNAGKTTLLHMLK++R+    PT +PTSEELSIG  KF  FDLGGH  ARRVW                    RFAESK              VPFL+LGNKID+P A SE EL+  LGL   TTGKGKV L + N+RP+E+FMCSIV + GYGDG +WLSQY+
Sbjct:    1 MWIVNWFYDVLSSLGLWNKNAKLLFLGLDNAGKTTLLHMLKNDRMAVSNPTVHPTSEELSIGNCKFTTFDLGGHIQARRVWKDYFPEVNGIVFLVDAADPTRFAESKAELDSLLAIEQLKTVPFLILGNKIDMPQAVSELELKDALGLYQ-TTGKGKVPL-EGNIRPIEIFMCSIVMRQGYGDGIRWLSQYV 190          
BLAST of FC868699 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.713e-54
Identity = 110/192 (57.29%), Postives = 132/192 (68.75%), Query Frame = 2
Query:  146 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 721
            MF+++WF+ VLASLGL  K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG +KF  +DLGGH  ARR+W                   ERFAESK              VPFL+LGNKID   A SEE+LR+ LGL   TTGKGK+ L D  +RP+EVFMCS+V + GYG+GF+WLSQYI
Sbjct:    1 MFIINWFWDVLASLGLMNKSAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLSIESLAQVPFLILGNKIDAYGAVSEEQLRHELGLYQ-TTGKGKIPLRD--IRPIEVFMCSVVMRQGYGEGFRWLSQYI 189          
BLAST of FC868699 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.894e-53
Identity = 108/192 (56.25%), Postives = 130/192 (67.71%), Query Frame = 2
Query:  146 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 721
            M++++WFY VLASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
The following BLAST results are available for this feature:
BLAST of FC868699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
SAR1A_ARATH2.710e-8479.79GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1A_BRACM1.942e-8278.76GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1B_ARATH6.248e-8177.60GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
SAR2_SOLLC2.625e-7974.61GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1B_BRACM2.902e-7875.77GTP-binding protein SAR1B OS=Brassica campestris G... [more]
SAR1_TOBAC9.063e-6464.65GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
SAR1_USTMA7.690e-5556.25Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
SAR1_YARLI1.004e-5457.29Small COPII coat GTPase SAR1 OS=Yarrowia lipolytic... [more]
SAR1_CRYNE1.713e-5457.29Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
SAR1_NEOFI1.894e-5356.25Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]

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Properties
Property NameValue
Genbank descriptionC31003F08EF AbioticL1 Citrus clementina cDNA clone C31003F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868699 ID=FC868699; Name=FC868699; organism=Citrus clementina; type=EST; length=725bp
GGAGCACTGAACTTGCTCATCTTCGGGTCAGTATCAAATCGAAACAGAGG
CCTTGAATTGGACGATCTGATTCGTTCTCAGCCTTAGATCGTCGTAAATT
CAAGCTCGATCCGTTTTCGTTTCTAATTTGTCTACCGATAAAGCCATGTT
TCTCCTCGACTGGTTCTACGGCGTGCTGGCCTCCCTCGGTCTTTGGCAGA
AAGAGGCCAAGATCTTGTTTTTAGGGCTTGATAATGCTGGAAAAACAACG
TTGCTTCACATGTTGAAAGATGAGAGATTGGTTCAACATCAGCCAACACA
GTATCCCACATCGGAAGAGCTTAGTATTGGGAAAATTAAGTTCAAGGCGT
TTGATTTGGGAGGCCATCAGATTGCTAGGAGAGTCTGGAAGGATTACTAT
GCGAAGGTTGATGCTGTGGTATACCTAGTGGATGCCTATGACAAAGAGAG
GTTTGCAGAATCAAAGAAAGAACTGGATGCACTCCTTTCTGATGAGGCAT
TGGCCAATGTTCCTTTTCTTGTGTTAGGAAACAAGATTGACATCCCTTAT
GCTGCTTCTGAGGAAGAGTTGCGTTACCACCTTGGCCTATCAAATTTCAC
CACTGGGAAGGGGAAGGTTAATCTAACGGACTCAAATGTCCGTCCACTGG
AGGTGTTTATGTGTAGCATAGTTCGCAAAATGGGATATGGTGATGGTTTC
AAATGGCTCTCTCAATACATTAAGT
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