FC868706

Overview
NameFC868706
Unique NameFC868706
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868706_ssr340 microsatellite FC868706_ssr340:340..351. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15075 contig Ccv1_Contig15075:160..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 379.022 bits (972), Expect = 1.279e-104
Identity = 187/219 (85.39%), Postives = 201/219 (91.78%), Query Frame = 2
Query:   26 NQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGA 682
            +QKGLIYSFV+KGTVVLAEHT YSGNFSTIA+QCLQKLP +SSKYTYSCDGHTFNFL+D+GFVFLVVADES GRSVPFVFLERVK+DFK+RY ASI+N+E HPLA           RFS+AYNLDREFGP LKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGE+IELLVDKTENLQFQADSFQRQGRQLRR+MWLQ+LQMKLMV GA
Sbjct:    2 SQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGA 220          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.060e-70
Identity = 125/224 (55.80%), Postives = 169/224 (75.45%), Query Frame = 2
Query:   17 KEFNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAXI 688
            +   Q+ LIYSFV++GTV+L E+T + GNF+ +A QCLQKLP+S++K+TY+CDGHTFN+L+++GF + VVA ESVGR +P  FLERVK+DF +RYG                           A +L+REFG +LKEHMQYC+ HP+E+SKL+K+KAQ+TEVKG+MM+NIEKVLDRGE+IELLVDKTENL+ QA  F+ QG ++RR+MW +N+++KL+V G  I
Sbjct:   64 RTMGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQ-------------------ANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIII 268          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 1.023e-69
Identity = 123/220 (55.91%), Postives = 167/220 (75.91%), Query Frame = 2
Query:   29 QKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGGAXI 688
            Q+ LIYSFV++GTV+LAE+T + GNF+++A QCLQKLP+S++K+TY+CDGHTFN+L D+GF + VV  ES GR +P  FLERVK+DF +RYG    +                      A +L++EFG +LKEHMQYC  HPEE+SKLSK+KAQ+TEVKG+MM+NIEKVLDRGE+IELLVDKTENL+ QA  F+ QG +++R++W +N+++KL+V G  +
Sbjct:    3 QQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAK-------------------ANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIV 203          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 2.975e-69
Identity = 123/215 (57.21%), Postives = 166/215 (77.21%), Query Frame = 2
Query:   29 QKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMV 673
            Q+ LIYSFV++GTV+L E T + GNF++IA QCLQKLP+S++K+TY+CDGHTFN+L+++GF + VVA +S GR +P  FLERVK+DF +RYG                         + A +L++EFG +LKEHMQYCM HP+E+SKL+K+KAQ++EVKG+MM+NIEKVLDRGE+IELLVDKTENL+ QA  F+ QG Q+RR+MW QN+++KL+V
Sbjct:    3 QQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGG-------------------KAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIV 198          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.131e-68
Identity = 123/215 (57.21%), Postives = 165/215 (76.74%), Query Frame = 2
Query:   29 QKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMV 673
            Q+ LIYSFV++GTV+L E T + GNF++IA QCLQKLP+S++K+TY+CDGHTFN+L++ GF + VVA +S GR +P  FLERVK+DF +RYG                         + A +L++EFG +LKEHMQYCM HP+E+SKL+K+KAQ++EVKG+MM+NIEKVLDRGE+IELLVDKTENL+ QA  F+  G Q+RR+MWLQN+++KL+V
Sbjct:    3 QQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGG-------------------KAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIV 198          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 4.761e-59
Identity = 109/218 (50.00%), Postives = 158/218 (72.48%), Query Frame = 2
Query:   29 QKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASS-SKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVGG 679
            Q+  IYSFV++GT++LAE+T ++GNF +IA QCLQKLP+SS SK+TY+CD HTFNFL++ G+ + VVA +S+ + +   FLERVK DFK+RYG    +                    +IA +L++EFGP +KEHM Y + H EE+ KL K+KAQ++EVK IM++NI+K +DRGE + +L DKTENL+ QA  +++QG Q+RR++W QN+++KL+V G
Sbjct:    3 QESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKAST-------------------AIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVLG 201          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.798e-51
Identity = 99/215 (46.05%), Postives = 145/215 (67.44%), Query Frame = 2
Query:   29 QKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMV 673
            Q+ L YSF+++GTV+L E T + GNF+++A Q L+ LP+S++K+TY+CDGHTFN L+++GF + VVA +S GR +P  FLERVK+DF +RYG      +                    A +L++EFG  LKEHMQYCM HP+E+S L+K KAQ++EVK +MM+NIEKVL RG   E+L     + + Q  +F  +  Q++R+ W QN+++KL+V
Sbjct:    3 QQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQ-------------------ANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEML----GSSESQPQAFYIKRTQMKRKKWFQNMKIKLIV 194          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.631e-33
Identity = 76/212 (35.85%), Postives = 130/212 (61.32%), Query Frame = 2
Query:   38 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPA--SSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKL 667
            +I++ V++GTVVL+E ++ S N S+I+ Q L+KLP   S S  +YS D + F+     G   L +ADE+ GR++PF FL+ +   F + YG +I + +                    AY+++ EF   L + M++  + P    ++S++K ++++V+ +M++NI+KVLDRGER+ELLVDKTEN+Q     F++Q R+ R  MW +N+++ +
Sbjct:    3 IIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRAIHSAQ--------------------AYSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVKLTI 193          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.631e-33
Identity = 74/213 (34.74%), Postives = 127/213 (59.62%), Query Frame = 2
Query:   38 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASS-SKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMV 673
            ++Y+ V++GTVVL+E T+ S N STIA Q L+K+P  + S  +YS D + F+     G   L +A+E+ GR +PF FLE +   F + YG ++                      ++AY ++ EF   L + + Y  + P    +++++K ++ +V+G+M++NI+KVLDRGER+ELLVDKT N+Q     F++Q R+ R  +W +N ++ +++
Sbjct:    3 ILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRAVHT--------------------ALAYAMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKLTVLL 194          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.200e-31
Identity = 73/213 (34.27%), Postives = 123/213 (57.75%), Query Frame = 2
Query:   38 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKY-TYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMV 673
            ++Y+ V++GTVVLAE ++ S N STIA Q L+K+P +   + +YS D + F+     G   L +ADE  GR +PF FLE +   F + YG +I + +                    AY ++ EF   L + ++Y  + P     +S++K ++ +V+ +M++NI+ +LDRGER+ELLVDKT N+Q     F++Q R+    +W +N ++ L++
Sbjct:    3 ILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRAIHSAQ--------------------AYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCKLTLLL 194          
The following BLAST results are available for this feature:
BLAST of FC868706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
VA727_ARATH1.279e-10485.39Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA725_ARATH2.060e-7055.80Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA726_ARATH1.023e-6955.91Putative vesicle-associated membrane protein 726 O... [more]
VA722_ARATH2.975e-6957.21Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA721_ARATH1.131e-6857.21Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA724_ARATH4.761e-5950.00Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA723_ARATH2.798e-5146.05Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA713_ARATH2.631e-3335.85Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA711_ARATH2.631e-3334.74Vesicle-associated membrane protein 711 OS=Arabido... [more]
VA712_ARATH4.200e-3134.27Vesicle-associated membrane protein 712 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC31003G05EF AbioticL1 Citrus clementina cDNA clone C31003G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868706 ID=FC868706; Name=FC868706; organism=Citrus clementina; type=EST; length=692bp
GGAGTAGAGAAATTGGAAAGAATTCAATCAGAAAGGGTTGATTTACAGCT
TTGTTTCGAAAGGCACTGTCGTTTTAGCCGAGCACACGTCGTATTCCGGA
AATTTCAGTACCATTGCCATTCAATGTTTACAGAAATTGCCTGCGAGTAG
TAGCAAGTACACGTATTCATGCGATGGCCACACTTTTAACTTCCTCCTCG
ACTCTGGATTCGTATTTCTGGTTGTTGCTGATGAATCGGTTGGGAGAAGT
GTGCCGTTTGTTTTTCTCGAACGAGTCAAGGATGATTTTAAACAGCGGTA
TGGGGCGAGTATTCAGAATGAGGAATCACACCCCCTTGCTGATGATGATG
AGGATGATGATTTGTTTGAAGATCGATTTAGCATTGCCTATAATCTTGAC
AGAGAATTTGGGCCAAGGCTTAAGGAGCACATGCAGTATTGTATGAGCCA
CCCTGAGGAGATGAGCAAGCTTTCCAAATTAAAGGCTCAAATAACTGAGG
TCAAGGGGATTATGATGGACAATATTGAGAAGGTTTTGGATCGTGGGGAG
AGGATTGAGCTACTGGTGGATAAAACAGAGAACCTGCAATTCCAGGCTGA
CAGCTTCCAGAGACAAGGGAGGCAGTTACGGCGAAGGATGTGGCTGCAGA
ATCTGCAAATGAAGTTGATGGTGGGAGGAGCAGNTATTTGCC
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