FC868708

Overview
NameFC868708
Unique NameFC868708
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868708_ssr23 microsatellite FC868708_ssr23:23..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9381 contig Ccv1_Contig9381:1..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC868708 vs. ExPASy Swiss-Prot
Match: UFOG_PETHY (Anthocyanidin 3-O-glucosyltransferase OS=Petunia hybrida GN=RT PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.578e-39
Identity = 86/245 (35.10%), Postives = 143/245 (58.37%), Query Frame = 2 
Query:   41 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILPPRKAQTQLQHFNLHPDLITLHPLTVPYVDGLPAGAETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYDIAY-WMATISKSLSIKCIKYNVVCAASIATALVPARNV-PKDRPVTEAELAMPPAGYPSDTIV-LRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIKTCHEIEGDLCEYIARQYNKPVFLTGSVLHEP 766
            A  +VM P+FA GH++PF+ L+NKL+  G K++        ++++          + PLT+P+V+GLP GAE+ +++  +S  LL +A+D  + Q++ ++   KP  + +D A  W+  ++  L IK + Y+VV A S A    PAR + PK  P  E ++  PP G+P  ++  +R  EAR+  ++   F  G + Y+RI + L+   AI  KTC ++EG   +Y+  Q+NKPVFL G V+ +P
Sbjct:   11 ALHVVMFPFFAFGHISPFVQLANKLSSYGVKVSFFTASGNASRVKSMLNSAPTTHIVPLTLPHVEGLPPGAESTAELTPASAELLKVALDLMQPQIKTLLSHLKPHFVLFDFAQEWLPKMANGLGIKTVYYSVVVALSTAFLTCPARVLEPKKYPSLE-DMKKPPLGFPQTSVTSVRTFEARDFLYVFKSFHNGPTLYDRIQSGLRGCSAILAKTCSQMEGPYIKYVEAQFNKPVFLIGPVVPDP 254
The following BLAST results are available for this feature:
BLAST of FC868708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UFOG_PETHY8.578e-3935.10Anthocyanidin 3-O-glucosyltransferase OS=Petunia h... [more]
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Properties
Property NameValue
Genbank descriptionC31003G07EF AbioticL1 Citrus clementina cDNA clone C31003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868708 ID=FC868708; Name=FC868708; organism=Citrus clementina; type=EST; length=767bp
GATGGCAGATTCAGGGAGCTGCTCATCATCATCATCATCAGCATTTCCCA
TTGTAATGTTACCATGGTTTGCTGTCGGCCACATGACTCCATTTCTTCAT
CTCTCCAACAAGCTAGCTGAAAAAGGCCATAAAATCACAATCCTACCGCC
CAGAAAGGCTCAAACACAGCTTCAACATTTCAACCTCCATCCTGATCTCA
TCACCTTACACCCTCTCACCGTCCCTTACGTCGACGGCCTCCCCGCCGGA
GCCGAAACCGCATCGGACGTACCCATGTCCTCCATCAATCTCCTCGTCAT
TGCAATGGACCGCTGCCGGGGCCAGGTGGAAGCAGTGATCAAAGCCGCAA
AGCCTAGGCTTCTTTTTTATGACATTGCTTACTGGATGGCGACAATATCC
AAGTCGTTGAGCATCAAATGCATTAAATACAACGTCGTCTGTGCCGCGTC
GATTGCCACTGCCCTTGTTCCGGCTAGAAATGTTCCAAAGGACAGGCCCG
TAACAGAAGCTGAATTAGCAATGCCGCCGGCAGGCTACCCTTCGGATACC
ATCGTATTACGTCGGCACGAAGCACGAGAGTTGACGTTCATATCATTCCC
GTTCGGAGAAGGAATGTCGTTTTACGAGCGAATCACAACATCCTTGAAAG
AATCCGACGCCATATCAATAAAGACTTGCCATGAAATAGAAGGGGATTTG
TGTGAATATATTGCACGTCAGTACAATAAGCCGGTTTTTCTGACCGGNTC
AGTTCTGCATGAACCGG
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