FC868717

Overview
NameFC868717
Unique NameFC868717
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig909 contig Ccv1_Contig909:136..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868717 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.393e-69
Identity = 132/202 (65.35%), Postives = 155/202 (76.73%), Query Frame = 3
Query:  138 PSFGSSSYSWNHHNYPQRPPYGQP------------SQEYAPQQYYATPSQSYSGRAPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAXPTSFAPII 707
            P +G+ SY     NYP  P Y QP            +Q Y+   Y A PSQSY     ++ ++LERKYSKI D+Y SLEQVT+ALARAGLESSNLIVGIDFTKSNEWTGARSF R+SLH IG   NPYEQAI+IIG+TL++FDEDNLIPC+GFGDASTHDQ+VFSF  +++FCNGFEEVL RY+E+VP L+LA PTSFAPII
Sbjct:   37 PQYGAESY-----NYPPPPSYAQPPEYTQPPPPLYSTQPYSAPSYSAPPSQSYGS---DNKKRLERKYSKISDDYSSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFNSEDRFCNGFEEVLSRYKEIVPQLKLAGPTSFAPII 230          
BLAST of FC868717 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.491e-63
Identity = 123/207 (59.42%), Postives = 151/207 (72.95%), Query Frame = 3
Query:  126 SSRQPSFGSSSYSWNHHNYPQRPPYGQPS--------QEYAPQQYYATPSQSYSGRAPEST-----RKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAXPTSFAPII 707
            SS  P +    Y+   +N P  PP   P+         +Y+ + Y +  SQ      P  +     +K +R+YSKI DNY SL QV++AL RAGLESSNLIVGIDFTKSNEWTGA+SF R+SLHH+ +  NPYEQAI+IIG+TL++FDEDNLIPC+GFGDASTHDQ+VFSFYP+ +FCNGFEEVL RYRE+VP L+LA PTSFAPII
Sbjct:   60 SSYGPQYSQEGYASQPNNPP--PPTYAPAPSPASSYGHQYSQEGYASAASQPNYPPPPSQSQVADRKKFDRRYSKISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWTGAKSFNRKSLHHLSNTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFYPEGRFCNGFEEVLARYREIVPQLKLAGPTSFAPII 264          
BLAST of FC868717 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 5.720e-31
Identity = 67/133 (50.38%), Postives = 89/133 (66.92%), Query Frame = 3
Query:  321 NYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSF---YPDEKFCNGFEEVLRRYRELVPHLRLAXPTSFAPII 707
            ++ +L+ +  A+  AGLE SNLI GID+TKSN + G R+F +R LH I   + NPY+Q I I+GKTLSSFD D  IP +GFGD    D  +F+    Y  EK CNGFEEVLR Y E+ P + ++ PT+F P+I
Sbjct: 7298 HFKTLDDIVKAIKHAGLEYSNLIFGIDYTKSNFYQGERTFDKRPLHTIDPAEMNPYQQVIQIVGKTLSSFDADGQIPAYGFGDEEFTDHGIFNIAERYDLEKDCNGFEEVLRVYNEVTPTIEMSGPTNFVPLI 7430          
BLAST of FC868717 vs. ExPASy Swiss-Prot
Match: CPNE1_HUMAN (Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 46/160 (28.75%), Postives = 75/160 (46.88%), Query Frame = 3
Query:  246 PSQSYSGRAPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAXPTSFAPII 707
            P +    ++ +++  +  K  +++  Y  L+ V            N  VG+DFT SN    +      SLH++     N Y  A+  +G  +  +D D L P FGFG     D +V      +F P   +C G + ++  YR+ +P +RL  PT+FAPII
Sbjct:  246 PEKQQKKKSYKNSGTIRVKICRVETEYSFLDYVMGGC------QINFTVGVDFTGSNGDPSSPD----SLHYLSPTGVNEYLMALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAPII 395          
BLAST of FC868717 vs. ExPASy Swiss-Prot
Match: CPNE3_MOUSE (Copine-3 OS=Mus musculus GN=Cpne3 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 41/115 (35.65%), Postives = 59/115 (51.30%), Query Frame = 3
Query:  381 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAXPTSFAPII 707
            N  VG+DFT SN    +      SLH+I  +  N Y  AI  +G  +  +D D + P FGFG       +V      +F P   +CNG + ++  YR  +P +RL  PT+F+PII
Sbjct:  291 NFTVGVDFTGSNGDPSSPD----SLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQVPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRTCLPQIRLYGPTNFSPII 401          
BLAST of FC868717 vs. ExPASy Swiss-Prot
Match: CPNE1_MOUSE (Copine-1 OS=Mus musculus GN=Cpne1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 50/167 (29.94%), Postives = 76/167 (45.51%), Query Frame = 3
Query:  225 PQQYYATPSQSYSGRAPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAXPTSFAPII 707
            P++     +   SG     T ++E +YS +D                G +  N  VG+DFT SN    +      SLH++     N Y  A+  +G  +  +D D L P FGFG     D +V      +F P   +C G + ++  YR+ +P +RL  PT+FAPII
Sbjct:  245 PEKQQRKKNYRNSGTVRVKTCRVETEYSFLD------------YVMGGCQI-NFTVGVDFTGSNGDPSSPD----SLHYLSPTGVNEYLTALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAPII 394          
BLAST of FC868717 vs. ExPASy Swiss-Prot
Match: CPNE3_PONAB (Copine-3 OS=Pongo abelii GN=CPNE3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 39/115 (33.91%), Postives = 60/115 (52.17%), Query Frame = 3
Query:  381 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAXPTSFAPII 707
            N  VG+DFT SN+   +      SLH+I  +  N Y  A+  +G  +  +D D + P FGFG       +V      +F P   +CNG + ++  YR  +P ++L  PT+F+PII
Sbjct:  291 NFTVGVDFTGSNDDPRSPD----SLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPII 401          
BLAST of FC868717 vs. ExPASy Swiss-Prot
Match: CPNE2_MOUSE (Copine-2 OS=Mus musculus GN=Cpne2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 39/112 (34.82%), Postives = 56/112 (50.00%), Query Frame = 3
Query:  390 VGIDFTKSNEWTGARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAXPTSFAPII 707
            VGIDFT SN           SLH+I     N Y  AI  +G+ +  +D D + P  GFG     D +V      +F P   FC+G + + + Y   +PH+R   PT+F+PI+
Sbjct:  310 VGIDFTASN----GNPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIV 417          
BLAST of FC868717 vs. ExPASy Swiss-Prot
Match: CPNE2_HUMAN (Copine-2 OS=Homo sapiens GN=CPNE2 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 39/112 (34.82%), Postives = 56/112 (50.00%), Query Frame = 3
Query:  390 VGIDFTKSNEWTGARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAXPTSFAPII 707
            VGIDFT SN           SLH+I     N Y  AI  +G+ +  +D D + P  GFG     D +V      +F P   FC+G + + + Y   +PH+R   PT+F+PI+
Sbjct:  310 VGIDFTASN----GNPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIV 417          
BLAST of FC868717 vs. ExPASy Swiss-Prot
Match: CPNE3_HUMAN (Copine-3 OS=Homo sapiens GN=CPNE3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 39/115 (33.91%), Postives = 59/115 (51.30%), Query Frame = 3
Query:  381 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAXPTSFAPII 707
            N  VG+DFT SN    +      SLH+I  +  N Y  A+  +G  +  +D D + P FGFG       +V      +F P   +CNG + ++  YR  +P ++L  PT+F+PII
Sbjct:  291 NFTVGVDFTGSNGDPRSPD----SLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPII 401          
The following BLAST results are available for this feature:
BLAST of FC868717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RGLG2_ARATH1.393e-6965.35E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH1.491e-6359.42E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL5.720e-3150.38Copine domain-containing protein 2 OS=Caenorhabdit... [more]
CPNE1_HUMAN1.565e-1228.75Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1[more]
CPNE3_MOUSE4.553e-1235.65Copine-3 OS=Mus musculus GN=Cpne3 PE=1 SV=2[more]
CPNE1_MOUSE4.553e-1229.94Copine-1 OS=Mus musculus GN=Cpne1 PE=1 SV=1[more]
CPNE3_PONAB7.767e-1233.91Copine-3 OS=Pongo abelii GN=CPNE3 PE=2 SV=1[more]
CPNE2_MOUSE1.325e-1134.82Copine-2 OS=Mus musculus GN=Cpne2 PE=2 SV=1[more]
CPNE2_HUMAN1.325e-1134.82Copine-2 OS=Homo sapiens GN=CPNE2 PE=1 SV=3[more]
CPNE3_HUMAN2.260e-1133.91Copine-3 OS=Homo sapiens GN=CPNE3 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC31003H07EF AbioticL1 Citrus clementina cDNA clone C31003H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868717 ID=FC868717; Name=FC868717; organism=Citrus clementina; type=EST; length=707bp
GAATTAGGTGAATAGTGCATGGTCAAATTTAGAAAAATTTCCAGTTAACG
GCACACGATGGAGTACTTTCAGTTAAATATCTGTTGGTTATAGAGTTGAT
GGGTGGGATAATTTCAAAACGGGAAAGTTCTCGGCAGCCTTCATTTGGGT
CTAGTTCATATTCATGGAATCATCACAATTATCCGCAGCGGCCACCATAT
GGTCAACCAAGTCAAGAGTATGCCCCACAACAGTATTATGCCACTCCATC
TCAAAGCTACAGTGGTCGGGCCCCAGAGTCGACGAGGAAGCTGGAGAGGA
AGTACTCCAAGATAGATGATAACTATCATAGCCTGGAGCAGGTTACGGAT
GCTTTGGCACGTGCTGGGCTAGAGTCATCAAATCTCATTGTTGGTATTGA
TTTCACAAAGAGCAATGAGTGGACTGGTGCAAGATCATTTCAGCGGAGAA
GTCTACATCACATTGGTGATGATCAGAATCCCTACGAACAAGCAATATCA
ATTATTGGAAAAACATTGTCTTCCTTTGATGAGGATAACTTAATTCCATG
TTTTGGTTTTGGAGATGCTTCAACACATGATCAAGAAGTGTTCAGTTTTT
ATCCGGACGAAAAGTTTTGTAATGGATTTGAAGAAGTGTTGAGACGATAT
AGAGAATTGGTCCCTCACCTACGACTTGCANGACCAACATCTTTTGCCCC
CATTATT
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