FC868719

Overview
NameFC868719
Unique NameFC868719
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9346 contig Ccv1_Contig9346:20..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868719 vs. ExPASy Swiss-Prot
Match: DHGY_CUCSA (Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 2.245e-82
Identity = 149/177 (84.18%), Postives = 155/177 (87.57%), Query Frame = 2
Query:   59 EPVSIAVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIRSA 589
            +PV I VWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIGDKCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGV                 RRIVEADEFMRAG YDGWLPNLFVGNLLKGQT+GVIGAGRI SA
Sbjct:    3 KPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIGDKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179          
BLAST of FC868719 vs. ExPASy Swiss-Prot
Match: GYAR_THELI (Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 42/96 (43.75%), Postives = 55/96 (57.29%), Query Frame = 2
Query:  314 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTIGVIGAGRIRSA 589
            K  +  AVGY+N+D+  A K GI V NTPGV                 RRIVEAD F+R+G +     GW P +F+G  LKG+T+G++G GRI  A
Sbjct:   69 KIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQA 164          
BLAST of FC868719 vs. ExPASy Swiss-Prot
Match: GYAR_KORCO (Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.779e-13
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  239 CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTIGVIGAGRIRSA 589
            CD ++  LT+     +F A  +   +  +  AVGY+N+DV  A K GI V NTPGV                 RR+VEAD ++R G +   W P + +G  + G+T+G++G GRI +A
Sbjct:   46 CDALVSLLTDPIDAEVFEAAPKL--RIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAA 161          
BLAST of FC868719 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13
Identity = 55/169 (32.54%), Postives = 87/169 (51.48%), Query Frame = 2
Query:   95 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTIGVIGAGRIRSA 589
            K +V+ T+ +P    I +L E    VE+   +  I S E ++  + D  D ++  L+E     +F A  R   K  +N AVGY+N+D+  A K G+ + NTP V                 RR++EAD+F+R+G +      W P +F+G  + G+TIG++G GRI  A
Sbjct:    2 KPKVLITRKIP-ENGIKMLREH-FEVEVWEDEHEI-SREVLLEKVRD-VDALVTMLSERIDAEVFDAAPRL--KIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQA 164          
BLAST of FC868719 vs. ExPASy Swiss-Prot
Match: GYAR_PYRFU (Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.418e-13
Identity = 54/169 (31.95%), Postives = 87/169 (51.48%), Query Frame = 2
Query:   95 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTIGVIGAGRIRSA 589
            K +V  T+ +P    IN+L E++  VE+  +++ I   E ++  + D  D ++  L+E   + +F    R   +  +N AVGY+N+DV  A + GI V NTP V                 R +V+ D+F+R+G +      W P  F+G  L G+TIG++G GRI  A
Sbjct:    2 KPKVFITRAIP-ENGINML-EEEFEVEVWEEEREIPR-EKLLEKVKD-VDALVTMLSERIDQEVFENAPRL--RIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQA 164          
BLAST of FC868719 vs. ExPASy Swiss-Prot
Match: GYAR_THEPD (Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.436e-12
Identity = 54/163 (33.13%), Postives = 79/163 (48.47%), Query Frame = 2
Query:   95 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTIGVIGAGRI 580
            K  V    P PG      ++++ C V +   K    S E+++  I DK D ++  LT+     +  A      K  S  +VG++++D+  A K GI V +TPGV                 RRIVEAD+ +R G +D  W P    G  LKG+TIG++G GRI
Sbjct:    5 KVYVTRIIPEPGLS----MLKECCDVVVHESKDWPPSREELLRNIRDK-DALLCLLTDKIDAEVMDAAPNL--KVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRI 160          
BLAST of FC868719 vs. ExPASy Swiss-Prot
Match: GYAR_AERPE (Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.436e-12
Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 2
Query:  323 SNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG----LYDGWLPNLFVGNLLKGQTIGVIGAGRIRS 586
            + MAVG++N+DV  A + GI V NTPGV                 RR+VEAD F+R G    L  GW P + +G  L+G+T+G++G GRI S
Sbjct:   73 AQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRWGEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGS 164          
BLAST of FC868719 vs. ExPASy Swiss-Prot
Match: GYAR_PYRKO (Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.178e-12
Identity = 48/151 (31.79%), Postives = 77/151 (50.99%), Query Frame = 2
Query:  149 LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTIGVIGAGRIRSA 589
            ++++   VE+  +++ I   E ++  + D  D ++  L+E     +F A  R   +  +N AVGY+N+DV  A + GI V NTP V                 RR++EAD F R+G +      W P  F+G  + G+TIG++G GRI  A
Sbjct:   18 MLKEHFEVEVWPEEREIPR-EVLLKKVRD-VDALVTMLSERIDSEVFDAAPRL--RIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIGIVGFGRIGQA 164          
BLAST of FC868719 vs. ExPASy Swiss-Prot
Match: GYAR_PYRAB (Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.178e-12
Identity = 49/151 (32.45%), Postives = 76/151 (50.33%), Query Frame = 2
Query:  149 LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTIGVIGAGRIRSA 589
            ++E++  VE+   ++ I   E ++  + D  D ++  L+E     +F    R   +  +N AVGY+N+DV  A K GI V NTPGV                 R +V+ D+F R+G +      W P  F+G  + G+TIG+IG GRI  A
Sbjct:   19 MLEKEFEVEVWEDEREIPR-EILLEKVKD-VDALVTMLSERIDREVFERAPRL--RIVANYAVGYDNIDVEEATKRGIYVTNTPGVLTDATADLAFALLLATARHLVKGDKFTRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGFGRIGQA 165          
BLAST of FC868719 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.307e-12
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = 2
Query:  149 LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTIGVIGAGRIRSA 589
            ++ +   VE+  +++ I   E ++  + D  D ++  L+E     +F    R   +  +N AVGY+NVDV  A + GI V NTP V                 RR++EAD F R+G +      W P +F+G+ + G+TIG+IG GRI  A
Sbjct:   18 MLREHFEVEVWPEEREIPR-EVLLEKVRD-VDALVTMLSERIDGEVFDNAPRL--RIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQA 164          
The following BLAST results are available for this feature:
BLAST of FC868719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
DHGY_CUCSA2.245e-8284.18Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-... [more]
GYAR_THELI7.614e-1443.75Glyoxylate reductase OS=Thermococcus litoralis GN=... [more]
GYAR_KORCO3.779e-1335.59Glyoxylate reductase OS=Korarchaeum cryptofilum (s... [more]
GYAR_THEON6.446e-1332.54Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]
GYAR_PYRFU8.418e-1331.95Glyoxylate reductase OS=Pyrococcus furiosus GN=gya... [more]
GYAR_THEPD1.436e-1233.13Glyoxylate reductase OS=Thermofilum pendens (strai... [more]
GYAR_AERPE1.436e-1242.39Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR P... [more]
GYAR_PYRKO4.178e-1231.79Glyoxylate reductase OS=Pyrococcus kodakaraensis G... [more]
GYAR_PYRAB4.178e-1232.45Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR ... [more]
GYAR_THEGJ9.307e-1232.45Glyoxylate reductase OS=Thermococcus gammatolerans... [more]

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Properties
Property NameValue
Genbank descriptionC31003H10EF AbioticL1 Citrus clementina cDNA clone C31003H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868719 ID=FC868719; Name=FC868719; organism=Citrus clementina; type=EST; length=591bp
AGCACACGCTCTGTCTTTGGCACTTGGAACTTGAAACTGCCAACTTAGCT
TCAATGGCGAACCAGTTTCGATTGCAGTGTGGAACCCAAATGGAAAATAC
AGAGTTGTTAGTACCAAGCCTATGCCTGGAACCCGCTGGATCAATCTCTT
AATCGAACAAGATTGCCGTGTTGAAATATGCACCCAGAAGAAAACTATAC
TCTCTGTTGAAGATATCATTGCTTTGATTGGTGACAAGTGCGATGGAGTC
ATTGGACAGTTGACAGAGGACTGGGGAGAGACTTTGTTTGCTGCACTGAG
TAGAGCAGGAGGAAAGGCTTTTAGTAACATGGCTGTTGGTTACAACAATG
TTGACGTTAATGCTGCTAACAAATATGGTATTGCTGTTGGAAACACTCCT
GGAGTACTTACAGAAACAACAGCAGAGTTAGCAGCTTCGCTCTCTCTAGC
GGCTGCAAGAAGAATTGTTGAAGCAGATGAGTTTATGAGAGCTGGCTTAT
ACGATGGATGGCTTCCAAATCTGTTCGTTGGGAACTTGCTCAAGGGACAG
ACTATTGGTGTGATTGGAGCTGGTCGTATAAGATCTGCCTA
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