FC868723

Overview
NameFC868723
Unique NameFC868723
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868723 vs. ExPASy Swiss-Prot
Match: C3H18_ORYSJ (Zinc finger CCCH domain-containing protein 18 OS=Oryza sativa subsp. japonica GN=Os02g0793000 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.805e-66
Identity = 119/199 (59.80%), Postives = 154/199 (77.39%), Query Frame = 1
Query:   88 SLTALNDAVASDPFNPELQEVLKELVQAIKDAEEGLFHLKRARLLREADLVLHGCSSRTEDVQAEPLDPADVEPEPLEDQRYSVGSKCRFRYNDGRWYDGRIIGLEETDSAKVSFLRPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSFLKKYVPTSWEQSLVGSTIWALSDDKVGIWRKAELGSWDDEHRMGEVV 684
            SLTA+++A+A+DP N +L EV +EL+ AIKDAEEGL HLKR+RL+++ D +       +E  +     P DVEPEPLE Q +SVGSKCRFR+ DGRWY+G +IGLE +  A++SFL PTSENM MCKFFLQQRCRFG+NCRLSHGI +P+  LK++ PT W+QSLVGS+I A S    G+WR+AEL SWDD+ ++G+VV
Sbjct:   27 SLTAVDEALAADPSNADLLEVHEELLAAIKDAEEGLLHLKRSRLVKQIDEIFPNQEPTSEAPEVAVDPPDDVEPEPLEPQEFSVGSKCRFRHKDGRWYNGCVIGLEGSSDARISFLTPTSENMSMCKFFLQQRCRFGSNCRLSHGIVIPILSLKQFTPTRWQQSLVGSSILAASGHHSGLWRRAELESWDDDLKVGQVV 225          
BLAST of FC868723 vs. ExPASy Swiss-Prot
Match: C3H22_ARATH (Zinc finger CCCH domain-containing protein 22 OS=Arabidopsis thaliana GN=At2g24830 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.833e-64
Identity = 118/200 (59.00%), Postives = 153/200 (76.50%), Query Frame = 1
Query:   85 DSLTALNDAVASDPFNPELQEVLKELVQAIKDAEEGLFHLKRARLLREADLVLHGCSSRTEDVQAEPLDPADVEPEPLEDQRYSVGSKCRFRYNDGRWYDGRIIGLEETDSAKVSFLRPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSFLKKYVPTSWEQSLVGSTIWALSDDKVGIWRKAELGSWDDEHRMGEVV 684
            +SL+++++A+ SDP NPEL  V +EL+ AIK+ EEGL HLKRARLL EAD+VL+G +          + P  +EPE  E+++   GSKCRFR+ DGRWY+GRIIG E +DSAK+SFL PTSE+M++CKFF+QQRCRFG++CR SHG+DVP+S LK Y  T W+Q +VGS IWA+S  K  IWRKAEL SWDDE ++G VV
Sbjct:   22 ESLSSIDEALLSDPSNPELLSVHEELLSAIKEVEEGLLHLKRARLLEEADIVLNGLNHDAG------VKPEHLEPEKTEEKKDLDGSKCRFRHTDGRWYNGRIIGFEGSDSAKISFLTPTSESMMICKFFMQQRCRFGSSCRSSHGLDVPISSLKNYEQTEWKQLMVGSKIWAVSGSKYDIWRKAELESWDDELQVGGVV 215          
The following BLAST results are available for this feature:
BLAST of FC868723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C3H18_ORYSJ8.805e-6659.80Zinc finger CCCH domain-containing protein 18 OS=O... [more]
C3H22_ARATH2.833e-6459.00Zinc finger CCCH domain-containing protein 22 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionC31004A05EF AbioticL1 Citrus clementina cDNA clone C31004A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868723 ID=FC868723; Name=FC868723; organism=Citrus clementina; type=EST; length=685bp
GATATCGAATAAGTCGCGGCAATCGCGGATGAAGAAGAGAGAGTTCTAGA
GAACCAGCTTGAACAGCAGTTGAATGAACAGAGGGACTCGCTCACCGCCT
TAAACGACGCCGTAGCTTCTGACCCCTTCAATCCCGAACTCCAGGAGGTA
CTTAAGGAGCTTGTTCAGGCAATTAAAGATGCTGAGGAAGGCCTTTTTCA
TCTAAAACGTGCTCGGTTGTTGCGAGAAGCTGATTTAGTGCTACATGGTT
GTAGTTCTAGGACTGAGGATGTCCAAGCAGAGCCACTTGATCCGGCTGAT
GTTGAACCTGAGCCGTTGGAGGACCAAAGGTACTCTGTTGGGTCAAAATG
TAGATTCCGCTATAATGATGGACGTTGGTATGATGGTCGGATTATTGGAT
TGGAGGAAACCGACTCTGCAAAGGTTTCTTTCCTCAGGCCTACATCTGAA
AATATGTTGATGTGCAAGTTCTTTCTGCAGCAACGATGTCGATTTGGTAC
TAACTGCCGCTTATCACATGGAATCGATGTCCCACTGTCTTTCCTGAAGA
AATATGTTCCAACAAGTTGGGAGCAGTCACTGGTGGGATCCACTATTTGG
GCACTCTCAGATGATAAAGTGGGCATTTGGAGAAAAGCAGAACTTGGATC
ATGGGATGATGAACATAGAATGGGGGAGGTTGTCT
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