FC868724

Overview
NameFC868724
Unique NameFC868724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868724_ssr414 microsatellite FC868724_ssr414:414..423. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.418e-55
Identity = 106/176 (60.23%), Postives = 132/176 (75.00%), Query Frame = 3
Query:   42 DFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVR 569
            D DN+QD CPT   ++   FING PCK+P +I A DFKSTKL +AGDTD +  S++TLLTA +FPGLNTLGLSV+RTDL+ DG V  H+HPR+SEMLFV KGVV AGFVDTN ++FQ +L+ G+V VFP+GLLHF  + G+E AT FS  NSQNPGVV+I +    D + I  + R
Sbjct:   19 DSDNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDTNNKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNIGEVFGIDQEHIKIMTR 194          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.285e-49
Identity = 99/200 (49.50%), Postives = 131/200 (65.50%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFS-DFDTIDDLVRKFISISALDE*SIRNVTLPKIY 635
            +D   LQD+CP     ++ +F+NG  CKSP  I ASDFK+  L  AGD D    SS  ++TA +FPGLNTLG+S+ARTD+ V G V+PH+HPRASEM+FV  G V+AGF DT  ++FQ  L  G+V +FPRGL+HF  N G+  AT FSVLNSQNPGVV I+ A F+ D +  + L+ + +S   +      +V  P  Y
Sbjct:   23 SDSPPLQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGKLFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFAPDSEVAEGLMARMLSFRDMGMDDSSSVDSPWFY 222          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL23_ORYSJ (Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.397e-33
Identity = 77/189 (40.74%), Postives = 116/189 (61.38%), Query Frame = 3
Query:   27 GFRRADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN--RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISI 584
            G   +D  +LQD+C  D  K  T+ +NG+ CK  + + A DF  + L  AG+T     S++T +  A  PGLNTLG+S+AR D  + G+  PHTHPRA+E+L V +G +  GFV +N   ++F  ++  G+V VFP+GL+HF FN G   A     L+SQNPGV+++++A F    +I DD++ K   +
Sbjct:   25 GVVASDPSHLQDLCVAD--KASTVRVNGVACKDGEDVAAEDFFFSGLHMAGNTTNKQGSAVTAVNVAQVPGLNTLGISLARIDYALHGLNPPHTHPRATEILTVLEGSLYVGFVTSNPENKLFTKVINKGDVFVFPKGLVHFQFNYGTTDAVAIVALSSQNPGVITVANAVFGSKPSITDDILAKAFQV 211          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL19_ARATH (Putative germin-like protein subfamily 1 member 9 OS=Arabidopsis thaliana GN=At5g38910 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.018e-32
Identity = 77/186 (41.40%), Postives = 106/186 (56.99%), Query Frame = 3
Query:    6 IICFTCIGFRRADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN--RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTID 557
            I+  T    + +D  +LQD C    T    +F+NG  CK P  +   DF  T L +A   +    S++T +   + PGLNTLG+S+ R D  V G   PHTHPRASE+L+V  G +  GFV +N   ++F   L  G+V VFP+GL+HF  NVG   A  F+ L+SQNPGV++I+D  F     ID
Sbjct:   12 ILAITLSLSKASDPSSLQDFCVGVNTPADGVFVNGKFCKDPKLVTVEDFFFTGLHEARPPNPKTGSNVTAVNVNNLPGLNTLGISLVRIDYGVYGQNPPHTHPRASEVLYVAVGTLFVGFVTSNPENRLFSKTLYEGDVFVFPQGLIHFQVNVGKYPAVAFAGLSSQNPGVITIADTVFGSNPQID 197          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL41_ORYSJ (Germin-like protein 4-1 OS=Oryza sativa subsp. japonica GN=Os04g0617900 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.914e-31
Identity = 79/189 (41.80%), Postives = 112/189 (59.26%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTK-LRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-----VFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISI 584
            +D   LQD C  D  K   +F+NG  CK+P ++ A+DF   K L   G+T     S++T +T  + PGLNTLG+S AR D   +G   PHTHPRA+E+L V +G ++ GFV +N+       F  +L  G+V VFP+GL+HF  N G   A   + L+SQNPGV++I++A F     I DD++ K   I
Sbjct:   28 SDPSQLQDFCVAD--KLSAVFVNGFVCKNPKQVTANDFFLPKALGVPGNTVNAQGSAVTPVTVNELPGLNTLGISFARIDFAPNGQNPPHTHPRATEILTVLQGTLLVGFVTSNQPGGGNLQFTKLLGPGDVFVFPQGLIHFQLNNGAVPAVAIAALSSQNPGVITIANAVFGSTPPILDDVLAKAFMI 214          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL22_ORYSJ (Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.805e-31
Identity = 73/180 (40.56%), Postives = 107/180 (59.44%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN--RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISI 584
            LQD C  D  K   + +NG PCK    + A DF  + L  AG+T     S++T +  A  PGLNT+G+S+ R D   +G+  PHTHPRA+E+  V +G +  GFV +N   ++F  +L  G+V VFP+GL+HF FN G   A   + L+SQNPGV+++ +A F    +I DD++ K   +
Sbjct:   34 LQDFCVVD--KMSQVRVNGFPCKDAKDVVAGDFFFSGLHMAGNTTNKQGSNVTTVNVAQIPGLNTMGVSLVRIDYAPNGLNPPHTHPRATEIPTVLEGSLYVGFVISNPENKLFTKVLNKGDVFVFPQGLVHFQFNNGTNNAVALAALSSQNPGVITVGNAVFGSKPSISDDILAKAFQV 211          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.805e-31
Identity = 75/174 (43.10%), Postives = 107/174 (61.49%), Query Frame = 3
Query:   24 IGFRRADFDNLQDICPTDT-TKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYS-SLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG-YEFATVFSVLNSQNPGVVSISDAAF 536
            +G  ++D D LQD C +   +  Q IF+NG  CK P +   SDF ++ L   G+T   P+  ++T+ T A+ PGLNT+GL++AR D    G+V PH HPRASE+     GV++ GFVDT+ +VF   L  GE  VFP+GL+HF +N+     A   S L+SQNPG   +S ++F
Sbjct:   13 MGRVKSDPDPLQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTTANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGRVFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSF 186          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL21_ORYSJ (Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.107e-30
Identity = 74/185 (40.00%), Postives = 107/185 (57.84%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN--RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISI 584
            +D   LQD C  D  K   + +NG  CK P  I   DF  + L  AG+T     S++T +  A   GLNTLG+S+AR D    G+  PH HPRA+E+L + +G +  GFV +N   ++F  +L  G+V VFP+GL+HF FN G +     + L+SQNPGV++I++A F     I DD++ K   +
Sbjct:   22 SDPSQLQDFCVAD--KMSQVLVNGFACKDPAAITVEDFFFSGLHMAGNTSNRQGSAVTGVNVAQISGLNTLGISLARVDYAPYGLNPPHIHPRATEILTILEGSLYVGFVTSNPENKLFTKVLNKGDVFVFPQGLIHFQFNYGTKDVIALAALSSQNPGVITIANAVFGSKPFISDDILAKAFQV 204          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: RHRE_PEA (Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.446e-30
Identity = 80/209 (38.28%), Postives = 110/209 (52.63%), Query Frame = 3
Query:    6 IICFTCIGFRRADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISISALDE*SIRNVTLPK 629
            ++  T      AD D LQD+C  D      I +NG  CK    + A DF S  L   G T+    S +T       PGLNTLG+S+AR D    G+  PHTHPRA+EM+FV +G +  GF+ T  Q+    +  GE  VFP+GL+HF  N G+E ATV +  NSQ PG V+I    F+    + D+++ K   I   +   I++   PK
Sbjct:   10 VVLATATTATAADADALQDLCVADYAS--VILVNGFACKPASNVTAEDFFSNLLVKQGATNNTFGSLVTGANVQRIPGLNTLGVSMARIDYAPGGLNPPHTHPRATEMVFVLEGQLDVGFITTTNQLIAKTIAKGETFVFPKGLVHFQKNNGWEPATVIAGFNSQLPGTVNIPLTLFNATPPVPDNVLTKAFQIGTKEVQKIKSKFAPK 216          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GLP1_MESCR (Germin-like protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.446e-30
Identity = 73/170 (42.94%), Postives = 98/170 (57.65%), Query Frame = 3
Query:   42 DFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-----RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAF 536
            D   LQD C         +F+NGL CK P  +   DF    L    +TD     + TL+TAA+ PGLNTLG+SVAR D    G+  PHTHPRA+E+  V +G    GFV +N      ++F  +L  G+V VFP+GL+HF  N+G       S L+SQNPGV++I++A F
Sbjct:   24 DPTQLQDFCVGVNKPNDGLFVNGLFCKDPMEVNPDDFLFRGLNMPANTDNALGFAATLVTAANLPGLNTLGISVARLDFAPHGLNPPHTHPRATEVFVVLEGTFYVGFVTSNLADGGNKLFAKVLNKGDVFVFPQGLIHFQLNIGNYPGVGISGLSSQNPGVITIANAVF 193          
The following BLAST results are available for this feature:
BLAST of FC868724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL34_ARATH8.418e-5560.23Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
GL111_ORYSJ5.285e-4949.50Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GL23_ORYSJ1.397e-3340.74Putative germin-like protein 2-3 OS=Oryza sativa s... [more]
GL19_ARATH2.018e-3241.40Putative germin-like protein subfamily 1 member 9 ... [more]
GL41_ORYSJ2.914e-3141.80Germin-like protein 4-1 OS=Oryza sativa subsp. jap... [more]
GL22_ORYSJ3.805e-3140.56Putative germin-like protein 2-2 OS=Oryza sativa s... [more]
GL11_ARATH3.805e-3143.10Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GL21_ORYSJ1.107e-3040.00Putative germin-like protein 2-1 OS=Oryza sativa s... [more]
RHRE_PEA1.446e-3038.28Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1... [more]
GLP1_MESCR1.446e-3042.94Germin-like protein OS=Mesembryanthemum crystallin... [more]

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Properties
Property NameValue
Genbank descriptionC31004A06EF AbioticL1 Citrus clementina cDNA clone C31004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868724 ID=FC868724; Name=FC868724; organism=Citrus clementina; type=EST; length=661bp
TGTACATAATCTGCTTCACTTGCATTGGCTTCCGCCGGGCAGATTTTGAT
AATCTTCAGGATATCTGCCCAACTGATACAACTAAGAAACAAACCATTTT
CATTAATGGTTTGCCATGCAAGAGTCCAGACCGCATATTTGCTTCGGATT
TCAAGTCCACGAAACTAAGAGATGCCGGCGACACAGATAAATTTCCCTAT
TCCTCATTGACCCTCCTCACTGCTGCAGATTTCCCAGGCCTTAACACTCT
TGGCCTTTCCGTTGCTAGAACTGACCTTGATGTGGATGGCATGGTGGTGC
CTCATACTCACCCTAGAGCCTCAGAGATGCTCTTCGTTTTCAAAGGTGTT
GTGATTGCTGGTTTTGTTGACACCAACAGACAGGTTTTCCAGGTAATGCT
TAAAGCAGGAGAAGTGTGTGTGTTTCCCAGGGGTCTGCTACACTTCGGCT
TTAACGTTGGTTATGAGTTCGCAACTGTTTTTTCAGTGCTAAACAGCCAG
AATCCTGGGGTGGTCAGCATCAGTGATGCCGCGTTCTCCGATTTCGATAC
CATTGACGACCTTGTGAGAAAATTCATTTCAATTTCTGCGTTGGACGAAT
AGAGTATCAGAAATGTCACACTTCCNAAGATTTACAAGCTTAAAATCACG
AAACACCACAT
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