FC868728

Overview
NameFC868728
Unique NameFC868728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10822 contig Ccv1_Contig10822:101..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: PROSC_HUMAN (Proline synthetase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.411e-49
Identity = 111/223 (49.78%), Postives = 150/223 (67.26%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQ-----LPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFXTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGST 752
            LR+V +RV QA  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+      L  +++WHFIG+LQ   V  L+A VPNL M+E+VD+ K+A ++N   +  G  + LKV+VQ+NTSGEESK G+ PS  + +V+H++  CPNLEF GLMTIG    D +  P  +F  L   R E+CK L IP +Q +LSMGMS DF+ A+E+GST
Sbjct:   17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMA-VPNLFMLETVDSVKLADKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGST 238          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: PROSC_PONAB (Proline synthetase co-transcribed bacterial homolog protein OS=Pongo abelii GN=PROSC PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.360e-49
Identity = 111/223 (49.78%), Postives = 150/223 (67.26%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQ-----LPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFXTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGST 752
            LR+V +RV QA     R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+      L  +++WHFIG+LQ   V  L+A VPNL ++E+VD+ K+AG++N   +  G  + LKV+VQ+NTSGEESK G+ PS  + +V+H++  CPNLEF GLMTIG    D +  P  +F  L   R E+CK L IP +Q +LSMGMS DF+ AIE+GST
Sbjct:   17 LRAVNERVQQAVALRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSLGPEIKWHFIGHLQKQNVNKLMA-VPNLFVLETVDSVKLAGKVNSSWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSVDFQHAIEVGST 238          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: PROSC_MOUSE (Proline synthetase co-transcribed bacterial homolog protein OS=Mus musculus GN=Prosc PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.144e-49
Identity = 110/223 (49.33%), Postives = 152/223 (68.16%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP-----DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMG-RKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFXTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGST 752
            LR+V +RV Q+  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+         +++WHFIG+LQ   V  L+A VPNL+M+E+VD+ K+A ++N   +  G  +PLKV+VQ+NTSGE+SK G+ PS  + +V+H+  +CP+LEF GLMTIG    D +  P  +F  L   R E+C+ LGIP EQ +LSMGMS DF+ AIE+GST
Sbjct:   17 LRAVNERVQQSVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSSWQKKGPTEPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTIGSFGHDLSQGPNPDFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQHAIEVGST 238          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: PROSC_BOVIN (Proline synthetase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.740e-48
Identity = 109/223 (48.88%), Postives = 148/223 (66.37%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP-----DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFXTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGST 752
            LR+V +RV QA  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+         +++WHFIG+LQ   V  L+A VPNL+M+E+VD+ K+A ++N   +  G  + LKV+VQ+NTSGE SK G+ P+    LV+H++  CP+LEF GLMTIG    D +  P  +F  L   R E+C+ LG P EQ +LSMGMS DF+ AIE+GST
Sbjct:   17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGENYVQELLEKASNPQILSSCPEIKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSAWQKKGSPERLKVMVQINTSGEASKHGLPPAEMAALVEHINAKCPSLEFVGLMTIGSFGHDLSQGPNPDFQVLLSLREELCRKLGAPPEQVELSMGMSVDFQHAIEVGST 238          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: PROSC_DICDI (Proline synthetase co-transcribed bacterial homolog protein OS=Dictyostelium discoideum GN=prosc PE=3 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 6.553e-47
Identity = 108/229 (47.16%), Postives = 145/229 (63.32%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDR--IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRL----------NRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQ--NCPN-LEFCGLMTIGMPDYTSTPENFXTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGST 752
            L S  + +    E  S   DR  +++VAVSKTKP  +IR +Y+ GHR FGENY+QE+V K+ +L +  +++WHFIG++QSNK K +L  V NL +VE+V+N+KI  +L          N        K L +++QVNTSGEESKSG +P  CL+LVKH  +  NC N L F GLMTIG P+ T    +F  L  C++ + K L IP +  +LSMGMS DFE AIE GST
Sbjct:   10 LISSYKNIKDRVEIISNKFDRHNVKLVAVSKTKPTEMIRILYDKGHRHFGENYIQELVSKSEELSELNEIKWHFIGSIQSNKSK-ILTSVKNLYVVETVENKKILDKLAKSLLNNEENNNNNNNNNNKKLNIMIQVNTSGEESKSGCKPEECLDLVKHCLEDNNCKNSLNFLGLMTIGNPNATPDQPDFKCLVDCKNNISKQLNIPLDSIELSMGMSHDFEPAIEFGST 237          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: Y112_PASMU (UPF0001 protein PM0112 OS=Pasteurella multocida GN=PM0112 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.369e-36
Identity = 98/218 (44.95%), Postives = 130/218 (59.63%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKA---AQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP-DYTSTPENFXTLAKCRSEVCKALGIPEEQCD-LSMGMSGDFELAIEMGSTM 755
            L  + Q +  A +++ RP   ++++AVSKTKPV  I Q Y+AG   FGENYVQE VEK    AQ    LEWHFIG LQSNK K +     +   ++++D +KIA RLN       +KPL VL+Q+N S E+SKSG++P+  L+L K + QN P+L   GLM I  P D  +T E   T      E  K   +P+ Q D LSMGM+ D   AI+ GSTM
Sbjct:    7 LAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQEGVEKIQYFAQKNIPLEWHFIGPLQSNKTKLV---AEHFDWMQTLDRKKIADRLNEQ-RPHYKKPLNVLIQINISDEDSKSGIQPNEMLDLAKQI-QNLPHLCLRGLMAIPAPTDDLATQEQAFTQMHSLFEQLKQ-ALPDAQIDTLSMGMTDDMASAIQCGSTM 218          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: YKC9_SCHPO (UPF0001 protein C644.09 OS=Schizosaccharomyces pombe GN=SPAC644.09 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.985e-36
Identity = 91/193 (47.15%), Postives = 120/193 (62.18%), Query Frame = 3
Query:  180 IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPE---NFXTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGS 749
            + +VAVSK  PV  + + Y AG R FGENY+QE ++K   +PDD++WHFIG+LQS+K K  +A V NL  +E++D EK A  +N   E + + PL V +QVNTSGEE+K GV PS  LEL K V Q+   L   GLMTIG    +   +   +F  L+  R  +   LGIP     LSMGMS D+ LAI+ GS
Sbjct:   24 VLLVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVELMPDDVQWHFIGSLQSSKCKK-IASVKNLYSIETIDTEKKARLVNSAREAL-QLPLNVYIQVNTSGEENKGGVTPSKVLELCKQV-QDMKYLRLKGLMTIGSISNSQLSDHNPDFQVLSDLRESLQNELGIP---LQLSMGMSSDYLLAIKYGS 210          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: Y090_HAEIN (UPF0001 protein HI0090 OS=Haemophilus influenzae GN=HI0090 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34
Identity = 93/219 (42.47%), Postives = 130/219 (59.36%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD---DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP-DYTSTPEN-FXTLAKCRSEVCKALGIPEEQCD-LSMGMSGDFELAIEMGSTM 755
            L  + Q++  A +  +R  + ++++AVSKTKP+S I   Y+AG   FGENYVQE VEK         +LEWHFIG LQSNK + +     +   ++++D  KIA RLN    T  + PL VL+Q+N S EESKSG++P   L L KH+ +N P+L   GLM I  P D  +  EN F  + +   ++ + L  P +Q D LSMGM+ D   AI+ GSTM
Sbjct:    7 LNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQEGVEKIQYFESQGINLEWHFIGPLQSNKTRLV---AEHFDWMQTLDRAKIADRLNEQRPT-NKAPLNVLIQINISDEESKSGIQPEEMLTLAKHI-ENLPHLCLRGLMAIPAPTDNIAEQENAFRKMLELFEQLKQVL--PNQQIDTLSMGMTDDMPSAIKCGSTM 218          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: Y461_VIBCH (UPF0001 protein VC_0461 OS=Vibrio cholerae GN=VC_0461 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 92/221 (41.63%), Postives = 129/221 (58.37%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDD-----LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTI--GMPDYTSTPENFXTLAKCRSEVCKALGIPEEQCD-LSMGMSGDFELAIEMGSTM 755
            +  +  ++  A ++  R    ++++AVSKTKPV  I +  +AG R FGENYVQE V+K     +      LEWHFIG LQSNK + +     +   V ++D EKIA RL+     +   PL+VL+QVNTSGE SKSG+EP     L + +S+  PNL   GLM+I   +PDY +    F  LA+ + ++ +       Q D LSMGMSGD + AIE GST+
Sbjct:    8 IEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEGVDKIRYFAEHHPQLALEWHFIGPLQSNKTRLV---AEHFDWVHTIDREKIALRLSEQ-RPVNMPPLQVLIQVNTSGEASKSGIEPQQLFTLAELISR-LPNLTLRGLMSIPENVPDYPAQLAAFTQLAELQQQLAQKY----PQIDTLSMGMSGDMQAAIEAGSTI 219          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: YPI1_VIBAL (UPF0001 protein in pilT-proC intergenic region OS=Vibrio alginolyticus PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.085e-33
Identity = 95/220 (43.18%), Postives = 126/220 (57.27%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEK----AAQLPDD-LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTI--GMPDYTSTPENFXTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTM 755
            +  +  ++    ++  R P+ ++++AVSKTKPV  I + Y+AG   FGENYVQE V K    A   PD+ +EWHFIG +QSNK + +     +   V ++D  KIA RLN        KPL+VL+QVNTSGE SKSGV  +   EL + +S+  PNL   GLM+I   + DY S    F  LA  +  +      PE    LSMGMSGD   AIE GSTM
Sbjct:    8 IEHITSQIRYDEQKCGRTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQHFAEHYPDNRIEWHFIGPIQSNKSRLV---AEHFDWVHTIDRTKIAQRLNDQ-RPSELKPLQVLIQVNTSGEASKSGVTEAEVFELAELISR-LPNLTLRGLMSIPANVSDYESQLHEFQKLATLKQTL--EAQFPEID-TLSMGMSGDMTAAIEAGSTM 219          
The following BLAST results are available for this feature:
BLAST of FC868728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PROSC_HUMAN1.411e-4949.78Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_PONAB5.360e-4949.78Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_MOUSE9.144e-4949.33Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_BOVIN7.740e-4848.88Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_DICDI6.553e-4747.16Proline synthetase co-transcribed bacterial homolo... [more]
Y112_PASMU1.369e-3644.95UPF0001 protein PM0112 OS=Pasteurella multocida GN... [more]
YKC9_SCHPO3.985e-3647.15UPF0001 protein C644.09 OS=Schizosaccharomyces pom... [more]
Y090_HAEIN1.674e-3442.47UPF0001 protein HI0090 OS=Haemophilus influenzae G... [more]
Y461_VIBCH4.871e-3441.63UPF0001 protein VC_0461 OS=Vibrio cholerae GN=VC_0... [more]
YPI1_VIBAL1.085e-3343.18UPF0001 protein in pilT-proC intergenic region OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31004B01EF AbioticL1 Citrus clementina cDNA clone C31004B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868728 ID=FC868728; Name=FC868728; organism=Citrus clementina; type=EST; length=767bp
GGAAGAATCAGGAACATGAAGAATCGCGCAAGAGGAGAGAGAATCATATC
AACGAACAAGTAGAAGCAGAAACCATGGCTGCGTCTGCCGCCACAGATGG
CGTTGCAGCGACGGCGCTTCGGTCCGTGATCCAACGGGTCCACCAAGCCG
CCGAGAGATCCAGTCGCCCGCCGGACCGGATTCGAATCGTCGCTGTCAGC
AAAACCAAACCGGTCTCAGTAATCCGTCAGGTTTATGAGGCCGGTCACCG
ATGTTTCGGTGAAAACTACGTTCAAGAAATAGTGGAAAAGGCGGCTCAGC
TTCCAGATGATCTAGAATGGCATTTCATTGGGAACCTGCAGAGCAATAAA
GTGAAACCTTTATTGGCTGGTGTGCCTAACCTGGCAATGGTAGAAAGTGT
GGACAACGAGAAGATTGCAGGTCGTCTTAATCGTATGGTTGAAACCATGG
GAAGGAAGCCTTTAAAAGTCTTGGTTCAAGTGAATACCAGTGGAGAAGAA
TCGAAATCTGGAGTTGAGCCTTCAGGGTGTCTGGAACTTGTGAAACATGT
TAGTCAAAACTGTCCGAATCTTGAGTTTTGTGGCCTAATGACGATTGGGA
TGCCAGATTACACATCGACCCCGGAGAACTTCNAGACATTAGCAAAATGC
AGAAGTGAGGTATGCAAGGCTCTTGGAATACCAGAAGAGCAATGTGATCT
GTCTATGGGAATGTCTGGTGACTTCGAGCTTGCTATTGAAATGGGGAGCA
CCATGTCAGGATTGGAT
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