FC868735

Overview
NameFC868735
Unique NameFC868735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9387 contig Ccv1_Contig9387:1..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_RAT (Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.071e-51
Identity = 89/156 (57.05%), Postives = 112/156 (71.79%), Query Frame = 3
Query:  219 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAPGM 686
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIWKE N   W + H  + H SSVNS+ WAPH+ GL LACGSSDG IS+ T T +G W+  +I+ AH +G  +VSWAP +
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_MOUSE (Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 8.071e-51
Identity = 89/156 (57.05%), Postives = 112/156 (71.79%), Query Frame = 3
Query:  219 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAPGM 686
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIWKE N   W + H  + H SSVNS+ WAPH+ GL LACGSSDG IS+ T T +G W+  +I+ AH +G  +VSWAP +
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_HUMAN (Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 3.067e-50
Identity = 88/156 (56.41%), Postives = 112/156 (71.79%), Query Frame = 3
Query:  219 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAPGM 686
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIW+E N   W ++H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T T +G W+  +I+ AH +G  +VSWAP +
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN-GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_BOVIN (Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.832e-50
Identity = 89/156 (57.05%), Postives = 110/156 (70.51%), Query Frame = 3
Query:  219 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAPGM 686
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIWKE N   W + H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T T  G W+  +I+ AH +G  +VSWAP +
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILVADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGLGQWEVKKINNAHTIGCNAVSWAPAV 162          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_DICDI (Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.174e-47
Identity = 86/159 (54.09%), Postives = 107/159 (67.30%), Query Frame = 3
Query:  204 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAP 680
            M  Q +++GHED VHD   D+YGK LAT SSD  IKI  +     QHL  L+GH GPVWQVAWAHPKFG ILAS SYD +VI+WKE   N W+  H +  H+ SVNSI+WAPHE GLSLAC SSDG++++     +  W+  +  Q   +G  SVSW+P
Sbjct:    1 MATQNVDSGHEDMVHDAQFDYYGKFLATCSSDKMIKIFDVGGENPQHLVDLRGHEGPVWQVAWAHPKFGKILASASYDRKVIVWKEVGNNSWSIIHQYAGHELSVNSISWAPHEFGLSLACASSDGSVTIHNYN-NNVWEAPQKIQVSQIGVNSVSWSP 158          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_USTMA (Protein transport protein SEC13 OS=Ustilago maydis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.509e-46
Identity = 95/182 (52.20%), Postives = 114/182 (62.64%), Query Frame = 3
Query:  213 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLA-TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE-------------GNQN----------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAPGM 686
            + IET HED VHD  +DFYGKRLAT SSD ++K+  + N      A TL GH+GPVWQVAWAHP FG ILASCSYDG+V+IWK+             G+Q+           WT+      H +SVNSI+WAPHELG  LAC SSDGN+SV T   DG W    +  AHPVG  +VSWAP +
Sbjct:   19 KNIETQHEDMVHDAQLDFYGKRLATCSSDRTVKVFDIVNGTPSTTAETLHGHQGPVWQVAWAHPTFGDILASCSYDGKVVIWKDNGAGASIGASAPYGSQSAYGAPTSSAGGWTKIKEHTLHTASVNSISWAPHELGSILACASSDGNVSVLTFNNDGTWAVDLV-AAHPVGCNAVSWAPAV 199          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_PICGU (Protein transport protein SEC13 OS=Pichia guilliermondii GN=SEC13 PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 7.317e-44
Identity = 84/155 (54.19%), Postives = 104/155 (67.10%), Query Frame = 3
Query:  219 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLA-TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAP 680
            I   H++ +HD  +D+YGKRLAT SSD +IKI  +  + +  L  TL GH GPVWQVAWAHPKFGSILASCSYDG+V++WKE     W+       H++SVNS++WAPHELG  L C SSDG +SV     D G  T  I +AH +G  S SWAP
Sbjct:    4 IANAHDELIHDAVLDYYGKRLATCSSDKTIKIFEVEGTENYQLTETLVGHEGPVWQVAWAHPKFGSILASCSYDGKVLVWKESPDRSWSIISEHKVHQASVNSVSWAPHELGAVLLCTSSDGRVSVVDFN-DDGTSTHIIFEAHKIGVNSASWAP 157          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_SCHPO (Protein transport protein sec13 OS=Schizosaccharomyces pombe GN=sec13 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.780e-43
Identity = 80/154 (51.95%), Postives = 105/154 (68.18%), Query Frame = 3
Query:  219 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAP 680
            ++T H+D +HD  +D+YGKRLAT SSD +IK+  + N+    L TL+GH GPVWQ+ WAHPKFG+ILAS SYDG VI+W+E     W++      H++SVN+++WAPHE G  LAC SSDG +SV     DG  D TRI  AH  G  +V W+P
Sbjct:    4 VDTQHDDMIHDAILDYYGKRLATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVWRE-TGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVLEFKDDGSCD-TRIFTAHEPGCNAVCWSP 155          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_COCIM (Protein transport protein SEC13 OS=Coccidioides immitis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.780e-43
Identity = 85/160 (53.12%), Postives = 110/160 (68.75%), Query Frame = 3
Query:  225 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ-----NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAPGMA 689
            +GH+D +HD  MD+YG+RLAT SSD +IKI  L   + + + TLKGH G VW VAWAHPKFG+ILAS SYDG+V+IW+E +      + W++   F+ H +SVN ++WAPHELG  LAC SSDG++SV     D  W T +I  AH +G  SVSWAP  A
Sbjct:    8 SGHDDMIHDAGMDYYGRRLATCSSDKTIKIFELEGDSHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQSSAASTGSSWSRVFDFSLHTASVNMVSWAPHELGCVLACASSDGHVSVL-EFRDNSW-THQIFHAHGMGVNSVSWAPAAA 165          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_LODEL (Protein transport protein SEC13 OS=Lodderomyces elongisporus GN=SEC13 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.742e-43
Identity = 86/156 (55.13%), Postives = 104/156 (66.67%), Query Frame = 3
Query:  219 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE-GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAP 680
            I   HED +HD  +D+YGKRLAT SSD +IKI  +  + +  L ATL GH GP+WQVAWAHPKFGSILASCSYDG+V+IWKE  +   W+       H++SVNS++WAPHELG  L C SSDG +SV     DG       D AH +G  S SWAP
Sbjct:    4 IGNAHEDLIHDAVLDYYGKRLATCSSDKTIKIYDIEGTENYKLTATLTGHEGPIWQVAWAHPKFGSILASCSYDGKVLIWKEQQDTQQWSIIAEHTIHQASVNSVSWAPHELGAVLLCTSSDGKVSVVDFNDDGTTSHVIFD-AHAIGVNSASWAP 158          
The following BLAST results are available for this feature:
BLAST of FC868735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
SEC13_RAT8.071e-5157.05Protein SEC13 homolog OS=Rattus norvegicus GN=Sec1... [more]
SEC13_MOUSE8.071e-5157.05Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=... [more]
SEC13_HUMAN3.067e-5056.41Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=... [more]
SEC13_BOVIN6.832e-5057.05Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 ... [more]
SEC13_DICDI3.174e-4754.09Protein transport protein SEC13 OS=Dictyostelium d... [more]
SEC13_USTMA3.509e-4652.20Protein transport protein SEC13 OS=Ustilago maydis... [more]
SEC13_PICGU7.317e-4454.19Protein transport protein SEC13 OS=Pichia guillier... [more]
SEC13_SCHPO2.780e-4351.95Protein transport protein sec13 OS=Schizosaccharom... [more]
SEC13_COCIM2.780e-4353.13Protein transport protein SEC13 OS=Coccidioides im... [more]
SEC13_LODEL4.742e-4355.13Protein transport protein SEC13 OS=Lodderomyces el... [more]

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Properties
Property NameValue
Genbank descriptionC31004B08EF AbioticL1 Citrus clementina cDNA clone C31004B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868735 ID=FC868735; Name=FC868735; organism=Citrus clementina; type=EST; length=690bp
GAGGAAAGAAGCTTTTTTAAGTTCCGACCACCACGGAAAAAGCCTAAAAA
CGTTTATTACTCTCAGCCGGTGCTACTGGTCGGTCTTCGAATCCGCTCCT
CTCTTAAGAAATTTGGAGCTGAGAACATAAGATAAAAAGGAGCTACGAAC
TAGTGATCAAGGAGTTGAAGTTTGAGGGGTAAAATAAAGAAATATAAAGT
AAGATGCCTGCACAAAAAATTGAAACTGGTCATGAAGACACTGTCCATGA
TGTAGCCATGGATTTCTATGGAAAACGTTTAGCCACAGCTTCGTCTGACT
CCAGCATTAAGATAATTGGTTTAAGCAACTCTGCTTCCCAGCACCTTGCT
ACATTGAAAGGCCATAGAGGTCCTGTTTGGCAAGTTGCATGGGCACACCC
CAAGTTTGGGTCAATCCTTGCTTCCTGTTCCTATGATGGCCAAGTTATTA
TCTGGAAGGAAGGTAATCAAAATGATTGGACACAGGCTCATACTTTTAAT
GATCATAAATCATCTGTCAACTCCATTGCGTGGGCACCTCATGAACTTGG
TCTCTCCTTGGCTTGTGGATCTTCTGATGGGAACATCTCAGTCTTTACTG
CTACAGCTGATGGTGGCTGGGATACTACCAGGATAGACCAGGCCCATCCA
GTCGGAAGTACATCTGTTTCATGGGCCCCCGGCATGGCTC
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