FC868743

Overview
NameFC868743
Unique NameFC868743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11966 contig Ccv1_Contig11966:63..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_ARATH (Homogentisate 1,2-dioxygenase OS=Arabidopsis thaliana GN=HGO PE=2 SV=2)

HSP 1 Score: 352.443 bits (903), Expect = 1.385e-96
Identity = 162/210 (77.14%), Postives = 182/210 (86.67%), Query Frame = 2
Query:   83 EDFSDLNYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHF 712
            ++  +L Y+SGFGN FSSEAI GALP   NSPL+CP+GLYAEQISGTSFTSPRKLNQRSWLYR+KPS THEPFKPRVPAH KLVSEFD SNS T PTQLRW+P DIPDS  DF+DGL+TICGAGSSFLRHG+AIHMY  N  M + AFCNADGDFL+VPQ GRLWI TECG+L V+PGEIAV+PQGFRF++ LPDG SRGY+AEI+G HF
Sbjct:    6 KELEELKYQSGFGNHFSSEAIAGALPLDQNSPLLCPYGLYAEQISGTSFTSPRKLNQRSWLYRVKPSVTHEPFKPRVPAHKKLVSEFDASNSRTNPTQLRWRPEDIPDSEIDFVDGLFTICGAGSSFLRHGFAIHMYVANTGMKDSAFCNADGDFLLVPQTGRLWIETECGRLLVTPGEIAVIPQGFRFSIDLPDGKSRGYVAEIYGAHF 215          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_ORYSJ (Homogentisate 1,2-dioxygenase OS=Oryza sativa subsp. japonica GN=HGO PE=2 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 3.654e-89
Identity = 153/207 (73.91%), Postives = 172/207 (83.09%), Query Frame = 2
Query:  104 YESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYT--TPTQLRWKPVDIPDS--PTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHF 712
            Y SG GNS SSEA+ G LPRG NSPLVCP GLYAEQ+SGT FT+PR  N R+WLYRIKPS THEPF PR PAH +L+ +FD++ + T  TPTQLRW+P D+P    P DFIDGLYT+CGAGSSFLRHGYAIHMY  NKSMD CAFCNADGDFL+VPQ+G+L I TECGKL V PGEI V+PQGFRFAV LPDGPSRGY++EIFGTHF
Sbjct:   24 YLSGLGNSLSSEAVAGTLPRGQNSPLVCPLGLYAEQLSGTPFTAPRARNLRTWLYRIKPSVTHEPFHPRRPAHPRLIGDFDRTTTDTVATPTQLRWRPADVPPHHPPLDFIDGLYTVCGAGSSFLRHGYAIHMYAANKSMDGCAFCNADGDFLIVPQQGKLLITTECGKLLVPPGEIVVIPQGFRFAVDLPDGPSRGYVSEIFGTHF 230          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_BURCJ (Homogentisate 1,2-dioxygenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=hmgA PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.916e-62
Identity = 118/202 (58.42%), Postives = 150/202 (74.26%), Query Frame = 2
Query:  104 YESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            Y SGF N F++EA+ GALP G NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+P   A  +LVSEF  S     T P QLRW P+ +P  PTDF+DGL T+ G GS+   +G AIH+Y  N+SM +  F +ADG+ L+VPQ+GRL+IATE G+L+V P EIAV+P+G RFAV+LPDG +RGYI E FG
Sbjct:   13 YLSGFANEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFEPYAGAQ-RLVSEFGDSADVPPTPPNQLRWDPLPMPVEPTDFVDGLVTMAGNGSAAAMNGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLFIATEFGRLDVEPFEIAVIPRGVRFAVALPDGDARGYICENFG 213          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_BURCH (Homogentisate 1,2-dioxygenase OS=Burkholderia cenocepacia (strain HI2424) GN=hmgA PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.808e-62
Identity = 118/202 (58.42%), Postives = 150/202 (74.26%), Query Frame = 2
Query:  104 YESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            Y SGF N F++EA+ GALP G NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+P   A  +LVSEF  S     T P QLRW P+ +P  PTDF+DGL T+ G GS+   +G AIH+Y  N+SM +  F +ADG+ L+VPQ+GRL+IATE G+L+V P EIAV+P+G RFAV+LPDG +RGYI E FG
Sbjct:   13 YLSGFANEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFEPYAGAQ-RLVSEFGDSADVPPTPPNQLRWDPLPMPVEPTDFVDGLVTMAGNGSAAAMNGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLFIATEFGRLDVEPFEIAVIPRGVRFAVALPDGNARGYICENFG 213          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_BURCA (Homogentisate 1,2-dioxygenase OS=Burkholderia cenocepacia (strain AU 1054) GN=hmgA PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.808e-62
Identity = 118/202 (58.42%), Postives = 150/202 (74.26%), Query Frame = 2
Query:  104 YESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            Y SGF N F++EA+ GALP G NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+P   A  +LVSEF  S     T P QLRW P+ +P  PTDF+DGL T+ G GS+   +G AIH+Y  N+SM +  F +ADG+ L+VPQ+GRL+IATE G+L+V P EIAV+P+G RFAV+LPDG +RGYI E FG
Sbjct:   13 YLSGFANEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFEPYAGAQ-RLVSEFGDSADVPPTPPNQLRWDPLPMPVEPTDFVDGLVTMAGNGSAAAMNGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLFIATEFGRLDVEPFEIAVIPRGVRFAVALPDGNARGYICENFG 213          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_BURS3 (Homogentisate 1,2-dioxygenase OS=Burkholderia sp. (strain 383) GN=hmgA PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.495e-62
Identity = 116/206 (56.31%), Postives = 152/206 (73.79%), Query Frame = 2
Query:   92 SDLNYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            ++  Y+SGF N F++EA+ GALP G NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+P      +LVSEF  S     T P QLRW P+ +P  PTDF+DGL T+ G GS+   +G AIH+Y  N+SM +  F +ADG+ L+VPQ+GRL+IATE G++EV P EIAV+P+G RF+V+LPDG +RGYI E FG
Sbjct:    9 ANAGYQSGFANEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFEPYAGPQ-RLVSEFGDSADVPPTPPDQLRWDPLPMPVEPTDFVDGLVTMAGNGSAAAMNGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLFIATEFGRVEVEPFEIAVIPRGVRFSVTLPDGDARGYICENFG 213          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_BURVG (Homogentisate 1,2-dioxygenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=hmgA PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.108e-61
Identity = 115/202 (56.93%), Postives = 150/202 (74.26%), Query Frame = 2
Query:  104 YESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            Y SGFGN F++EA+ GALP G NSP   P+GLYAEQ+SGT+FT+PR  N+R+WLYRI+P+A H PF+P      +LV+EF  S     T P QLRW P+ +P  PTDF++GL T+ G GS+   +G AIH+Y  N+SM +  F +ADG+ L+VPQ+GRL+IATE G+L+V P EIAV+P+G RFAV+LPDG +RGYI E FG
Sbjct:   13 YLSGFGNEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRAWLYRIRPAAVHRPFEP-FTGRQRLVAEFGDSADVPPTPPNQLRWDPLPMPVEPTDFVEGLVTMAGNGSAAAMNGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLFIATEFGRLDVEPAEIAVIPRGVRFAVALPDGDARGYICENFG 213          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_BURA4 (Homogentisate 1,2-dioxygenase OS=Burkholderia ambifaria (strain MC40-6) GN=hmgA PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.468e-61
Identity = 116/202 (57.43%), Postives = 150/202 (74.26%), Query Frame = 2
Query:  104 YESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            Y SGF N F++EA+ GALP G NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+P V    +LVSEF  S     T P QLRW P+ +P  PTDF++GL T+ G GS+   +G AIH+Y  N+SM +  F +ADG+ L+VPQ+GRL+IATE G+L+V P EIAV+P+G RF+V+LPDG +RGYI E FG
Sbjct:   13 YLSGFANEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFEP-VTGPQRLVSEFGDSADVPPTPPNQLRWDPLPMPVEPTDFVEGLVTMAGNGSAAAMNGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLFIATEFGRLDVEPFEIAVIPRGVRFSVALPDGDARGYICENFG 213          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_BURCC (Homogentisate 1,2-dioxygenase OS=Burkholderia cenocepacia (strain MC0-3) GN=hmgA PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.210e-61
Identity = 117/202 (57.92%), Postives = 149/202 (73.76%), Query Frame = 2
Query:  104 YESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            Y SGF N F++EA+ GALP G NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+P   A  +LVSEF  S     T P QLRW P+ +   PTDF+DGL T+ G GS+   +G AIH+Y  N+SM +  F +ADG+ L+VPQ+GRL+IATE G+L+V P EIAV+P+G RFAV+LPDG +RGYI E FG
Sbjct:   13 YLSGFANEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFEPYAGAQ-RLVSEFGDSADVPPTPPNQLRWDPLPMLVEPTDFVDGLVTMAGNGSAAAMNGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLFIATEFGRLDVEPFEIAVIPRGVRFAVALPDGDARGYICENFG 213          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_BURM1 (Homogentisate 1,2-dioxygenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=hmgA PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.181e-61
Identity = 115/202 (56.93%), Postives = 148/202 (73.27%), Query Frame = 2
Query:  104 YESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            Y SGF N F++EA+ GALP G NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+P   A  +LVS+F  S     T P QLRW P+ +P  PTDF++GL T+ G GS+    G AIH+Y  N+SM +  F +ADG+ L+VPQ+GRL+IATE G+L+V P EIAV+P+G RF V+LPDG +RGYI E FG
Sbjct:   13 YLSGFANEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFEPFAGAQ-RLVSDFADSADVPPTPPNQLRWNPLPMPSEPTDFVEGLVTMAGNGSAAAMSGCAIHLYAANRSMRDRFFYSADGELLIVPQQGRLFIATELGRLDVEPFEIAVIPRGVRFTVALPDGDARGYICENFG 213          
The following BLAST results are available for this feature:
BLAST of FC868743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_ARATH1.385e-9677.14Homogentisate 1,2-dioxygenase OS=Arabidopsis thali... [more]
HGD_ORYSJ3.654e-8973.91Homogentisate 1,2-dioxygenase OS=Oryza sativa subs... [more]
HGD_BURCJ2.916e-6258.42Homogentisate 1,2-dioxygenase OS=Burkholderia cepa... [more]
HGD_BURCH3.808e-6258.42Homogentisate 1,2-dioxygenase OS=Burkholderia ceno... [more]
HGD_BURCA3.808e-6258.42Homogentisate 1,2-dioxygenase OS=Burkholderia ceno... [more]
HGD_BURS36.495e-6256.31Homogentisate 1,2-dioxygenase OS=Burkholderia sp. ... [more]
HGD_BURVG1.108e-6156.93Homogentisate 1,2-dioxygenase OS=Burkholderia viet... [more]
HGD_BURA42.468e-6157.43Homogentisate 1,2-dioxygenase OS=Burkholderia ambi... [more]
HGD_BURCC4.210e-6157.92Homogentisate 1,2-dioxygenase OS=Burkholderia ceno... [more]
HGD_BURM17.181e-6156.93Homogentisate 1,2-dioxygenase OS=Burkholderia mult... [more]

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Properties
Property NameValue
Genbank descriptionC31004C05EF AbioticL1 Citrus clementina cDNA clone C31004C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868743 ID=FC868743; Name=FC868743; organism=Citrus clementina; type=EST; length=724bp
AGGATTGTTAGTGATCTGCTGAGACCAAATGGAGAAGAAGAGTCAACATC
AATCATCATCATTAATCAGAAAATCGCACGGCGAAGATTTCTCTGATCTG
AATTACGAGTCAGGATTCGGCAACAGCTTCTCGTCGGAGGCGATCGACGG
TGCGTTGCCACGTGGATAGAACAGCCCCCTCGTTTGTCCGTTCGGTCTCT
ACGCCGAACAGATCTCCGGCACCTCCTTCACCTCCCCTCGCAAGCTCAAT
CAACGCAGTTGGTTATACAGAATAAAACCTTCTGCAACACATGAACCGTT
TAAGCCTCGAGTGCCTGCTCATGGGAAGCTGGTGAGTGAATTTGACAAGT
CTAACAGTTACACTACGCCGACTCAGCTCCGGTGGAAGCCGGTTGATATC
CCTGATTCACCGACTGATTTTATTGACGGGTTGTACACGATATGTGGGGC
TGGCAGCTCATTTCTTCGGCATGGATATGCTATTCACATGTACACTACCA
ACAAATCAATGGACAACTGTGCCTTCTGTAATGCTGATGGAGATTTTTTG
GTAGTTCCCCAAAAAGGAAGGCTGTGGATTGCTACTGAATGTGGAAAACT
GGAAGTCTCTCCTGGTGAAATTGCCGTTTTACCTCAAGGGTTTCGTTTTG
CTGTAAGTTTACCAGATGGTCCATCACGTGGTTACATCGCAGAGATTTTT
GGTACCCATTTCAGCTTCCTGATC
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