FC868750
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: VP241_ARATH (Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1) HSP 1 Score: 295.434 bits (755), Expect = 2.010e-79 Identity = 150/183 (81.97%), Postives = 167/183 (91.26%), Query Frame = 3 Query: 177 MEKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQLP 725 ME+VMN+IKPKP+P+QLLRDWQRKLRQECRNIERQIRDIQ+EE+NVQKAIK+AAKRNDM SAK+LA+E+V SR+TVNRLYENKAQMNSISMHLGESVAIARTVGHL+KSAEVMKLVNNLMKAP++AATMQEFSKEMTKAGVIEEFVN+A+D ALDS VDKV IAGETAA+LP Sbjct: 1 MERVMNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELP 183
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: VP242_ARATH (Putative vacuolar protein sorting-associated protein 24 homolog 2 OS=Arabidopsis thaliana GN=VPS24-2 PE=2 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 2.316e-51 Identity = 105/152 (69.08%), Postives = 124/152 (81.58%), Query Frame = 3 Query: 270 IERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQLP 725 I+ + DI+REE+NV KAIKD+ KRND+ +AK+LA+E+V SR+TV RLYENKAQ+NSISMHLGES+A A TVG+L+KS EVMKLVN+LMKAPE+A TMQ FSKEMTK GVIEEFV+DAVD ALDS VDKV IAGETAA+LP Sbjct: 3 IKSLLSDIEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHLGESIATAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAVDNALDSEDIEEEIEEEVDKVLTAIAGETAAELP 154
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHMP3_RAT (Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Vps24 PE=1 SV=3) HSP 1 Score: 147.517 bits (371), Expect = 6.769e-35 Identity = 70/157 (44.59%), Postives = 106/157 (67.52%), Query Frame = 3 Query: 216 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKV 686 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++ Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRI 168
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHMP3_PONAB (Charged multivesicular body protein 3 OS=Pongo abelii GN=VPS24 PE=2 SV=3) HSP 1 Score: 147.517 bits (371), Expect = 6.769e-35 Identity = 70/157 (44.59%), Postives = 106/157 (67.52%), Query Frame = 3 Query: 216 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKV 686 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++ Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI 168
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHMP3_MOUSE (Charged multivesicular body protein 3 OS=Mus musculus GN=Vps24 PE=1 SV=3) HSP 1 Score: 147.517 bits (371), Expect = 6.769e-35 Identity = 70/157 (44.59%), Postives = 106/157 (67.52%), Query Frame = 3 Query: 216 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKV 686 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++ Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRI 168
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHMP3_MACFA (Charged multivesicular body protein 3 OS=Macaca fascicularis GN=VPS24 PE=2 SV=3) HSP 1 Score: 147.517 bits (371), Expect = 6.769e-35 Identity = 70/157 (44.59%), Postives = 106/157 (67.52%), Query Frame = 3 Query: 216 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKV 686 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++ Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIRATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRI 168
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHMP3_BOVIN (Charged multivesicular body protein 3 OS=Bos taurus GN=VPS24 PE=2 SV=4) HSP 1 Score: 147.517 bits (371), Expect = 6.769e-35 Identity = 70/157 (44.59%), Postives = 106/157 (67.52%), Query Frame = 3 Query: 216 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKV 686 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++ Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRI 168
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHMP3_HUMAN (Charged multivesicular body protein 3 OS=Homo sapiens GN=VPS24 PE=1 SV=3) HSP 1 Score: 147.132 bits (370), Expect = 8.840e-35 Identity = 70/157 (44.59%), Postives = 106/157 (67.52%), Query Frame = 3 Query: 216 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKV 686 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++ Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI 168
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHMP3_XENLA (Charged multivesicular body protein 3 OS=Xenopus laevis GN=vps24 PE=2 SV=3) HSP 1 Score: 145.206 bits (365), Expect = 3.359e-34 Identity = 70/157 (44.59%), Postives = 106/157 (67.52%), Query Frame = 3 Query: 216 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKV 686 P+ L+ +W K+R+E R I+RQIRDIQRE++ V+++IK++AK+ + + LA+E+V+S+K VN+LY +KA MNS+ M + +A+ R G L KS EVMK + NL+K PE+ ATM+E SKEM KAG+IEE + D + D +D++ Sbjct: 12 PKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVQSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKLPEIQATMRELSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRI 168
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHMP3_DANRE (Charged multivesicular body protein 3 OS=Danio rerio GN=vps24 PE=2 SV=3) HSP 1 Score: 144.821 bits (364), Expect = 4.387e-34 Identity = 69/157 (43.95%), Postives = 106/157 (67.52%), Query Frame = 3 Query: 216 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKV 686 P+ L+ +W K+R+E R I+RQIRDIQREE+ V+++IKDAAK+ LA+E+++S++ +N+LY +KAQMNS+ + + +++ R G L KS EVMK + +L+K PE+ ATM++ SKEM KAG+IEE + D ++ D VDK+ Sbjct: 12 PKDLINEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCIILAKEMIQSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKSTEVMKAMQSLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTLEGMDDEEEMEEAAEAEVDKI 168 The following BLAST results are available for this feature:
BLAST of FC868750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868750 ID=FC868750; Name=FC868750; organism=Citrus clementina; type=EST; length=727bpback to top |