FC868751

Overview
NameFC868751
Unique NameFC868751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868751_ssr159 microsatellite FC868751_ssr159:159..170. BLAST: Citrus ESTs to Prunus persica proteins V1
FC868751_ssr32 microsatellite FC868751_ssr32:32..51. BLAST: Citrus ESTs to Prunus persica proteins V1
FC868751_ssr167 microsatellite FC868751_ssr167:167..178. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9391 contig Ccv1_Contig9391:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868751 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.310e-80
Identity = 138/183 (75.41%), Postives = 160/183 (87.43%), Query Frame = 1
Query:  151 PPSEEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPS-NNPLEPVIHAFNTWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPL 696
            P S   ++KKWGTH+MGAPA P AHPDNQ+AA+W A + QQ  +Q YV YSP++ P+ NNPLEPVI  F+TWS KAET+ARN+WHNLKTGPS+SE AWGKVNLTAKAIT+GGFESLF+QIF T+PNE LKKTFACYLSTTTGPVAGT+YLS ARVAFCSDRPL FTAPSGQE+WSYY+V++PL
Sbjct:   29 PSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPL 211          
BLAST of FC868751 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.623e-30
Identity = 78/198 (39.39%), Postives = 109/198 (55.05%), Query Frame = 1
Query:  133 STLTEAPPSEEEERKK---WGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPSNNPLEPVIHAFNTW-------STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPL 696
            ST  +AP       KK   W   ++      S  PD QKAAS ++        +S  E S  D    + +E V      W       + K E++A N W +L+T PS ++AA G++  + K   EGG+E +F+Q F TDP E+L  +FACYLST+ GPV G LY+S+A++A+CSD PL +     Q  WSYYKV+IPL
Sbjct:   53 STPVKAPSRTSSGSKKSVHWSPELVSG----SQEPD-QKAASSSSAGSNPYIARSPAETS--DASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSY-KNGDQTEWSYYKVVIPL 242          
BLAST of FC868751 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.421e-28
Identity = 71/170 (41.76%), Postives = 95/170 (55.88%), Query Frame = 1
Query:  205 PAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPSNNPLEPVIHAFNTW-------STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIP 693
            P  P   P    A +  AE+        YV  SP  +   N ++ V      W       + KAE +A N W +LKTGPSV++AA  ++    K + EGG+E +FKQ F   P+EKL KT+ACYLST+ GPV G +YLST ++AF SD PL +     Q  WSYYKV++P
Sbjct:   45 PPPPQPIPTGAAATTMPAESNP------YVSPSPAPR---NTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSY-KEGEQTLWSYYKVVLP 204          
BLAST of FC868751 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 42/109 (38.53%), Postives = 67/109 (61.47%), Query Frame = 1
Query:  370 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPL 696
            K ++    +    K GP ++E    K++L A+ +  GG E ++K++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G+    +YKV IPL
Sbjct:   56 KNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPL 164          
BLAST of FC868751 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 57/166 (34.34%), Postives = 85/166 (51.20%), Query Frame = 1
Query:  163 EEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPSNNPLEPVIHAFNTW-------STKAETIARNIW-HNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPL 636
            + E   W   ++      S  PD +  +S +A        ++  E S  D      +E V      W       + KAE++A N W H L+       AA G++  + K + EGG+E +F+Q F T P E+L+ +FACYLST+ GPV G LY+STA++A+CSD  L
Sbjct:   24 DRENLHWNPELVSE----SPAPDEKALSSSSAARSNPYVARAPTETS--DASLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR-------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL 176          
BLAST of FC868751 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 42/96 (43.75%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  409 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPL 696
            K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G  +  +YKV IPL
Sbjct:   69 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPL 164          
BLAST of FC868751 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1
Query:  409 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPL 696
            K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT G +AG L++S+ ++AFCS+R +  T+P G     +YKV IPL
Sbjct:   61 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPL 156          
BLAST of FC868751 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.511e-17
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  370 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPL 696
            K +     +    K  P ++E    K++L A+ +  GG E +FK++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G     +YKV IPL
Sbjct:   55 KTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPL 163          
BLAST of FC868751 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  370 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCF-TAPSGQEAWSYYKVMI 690
            KAE +   +  +LK  PS+S+AA  +++   K I EGG E +F++ F     EKL  +F CY+STT+GPV G +Y+S  R+AFCSD  +   ++  G    +YYKV++
Sbjct:   66 KAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVM 173          
The following BLAST results are available for this feature:
BLAST of FC868751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEML5_ARATH1.310e-8075.41GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEM_ARATH1.623e-3039.39GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML1_ARATH4.421e-2841.76GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEML8_ARATH3.176e-1838.53Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML3_ARATH3.176e-1834.34Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML6_ARATH5.417e-1843.75GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML7_ARATH1.207e-1743.75GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH3.511e-1738.53GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
GEML2_ARATH1.334e-1640.74GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
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Properties
Property NameValue
Genbank descriptionC31004D01EF AbioticL1 Citrus clementina cDNA clone C31004D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868751 ID=FC868751; Name=FC868751; organism=Citrus clementina; type=EST; length=696bp
GGTGACCGTGAATAACAATAAATCCATCAGAATTTATTTATTTATTTATT
TTTGTTCTCATAGCAATAGCCTCAACCTTCCAGTCAATCGACAACCAGCA
TCACCATGACAAGCACACCAGAAAAATTGTCAAGCACTCTGACAGAAGCT
CCACCTTCAGAAGAAGAAGAAAGAAAGAAATGGGGTACCCATATCATGGG
AGCGCCAGCGGTGCCTAGTGCTCACCCAGACAATCAAAAGGCAGCCTCAT
GGAACGCCGAAAACCGCCAGCAAATCTATCATCAGTCTTATGTCGAGTAC
TCTCCTATCGACAAGCCAAGTAACAACCCTTTGGAGCCTGTAATTCACGC
GTTCAATACTTGGAGCACCAAAGCTGAGACCATTGCCCGCAACATCTGGC
ATAATCTGAAAACCGGTCCCTCTGTGTCGGAAGCTGCATGGGGGAAGGTG
AATTTGACAGCGAAAGCAATAACAGAGGGCGGATTTGAGTCTCTCTTCAA
GCAGATTTTTGCAACTGATCCGAATGAGAAGCTAAAGAAGACCTTTGCGT
GTTATCTTTCTACAACAACTGGTCCTGTTGCTGGAACACTCTATTTATCA
ACGGCCCGTGTGGCTTTTTGCAGTGATCGTCCCTTGTGTTTTACTGCTCC
ATCTGGGCAGGAAGCTTGGAGCTACTACAAGGTTATGATACCTTTG
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