FC868753

Overview
NameFC868753
Unique NameFC868753
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868753 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.193e-52
Identity = 103/217 (47.47%), Postives = 147/217 (67.74%), Query Frame = 2
Query:   83 HRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLG---SFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKLK 724
            H V+ DP + ++TWK+L+ A+ +I+  NAS LSFEELYRN YNMVL K G+ LY+ L   +  HL  + K++  +    FL ELN  W +H  ++ MIRDILMYMDR ++   + + V +LGL L+RD V H S I+ RL +TLL +VQ+ER GEVI+R L++NI +ML+DLG     VY +DFEK  L  ++  Y+ +SQ  I++C C DY+KK++
Sbjct:   17 HGVLADPDFPKRTWKLLKTAMRQIHQQNASNLSFEELYRNGYNMVLQKHGDLLYNNLKKMVDKHLKAVAKTVSESIDEKFLLELNSSWINHKTSMLMIRDILMYMDRNYVKQNNLSSVFDLGLYLFRDNVAHCSTIKDRLLNTLLSMVQKEREGEVIDRILIKNIVQMLIDLGVNSKNVYIEDFEKPLLLKTSSHYQAQSQTLIQTCSCPDYMKKVE 233          
BLAST of FC868753 vs. ExPASy Swiss-Prot
Match: CUL3_XENTR (Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.055e-51
Identity = 106/229 (46.29%), Postives = 150/229 (65.50%), Query Frame = 2
Query:   50 KKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHL-TEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDL---GSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKLK 724
            K    +I AF   + +D KY    W +L++AI EI   N SGLSFEELYRNAY MVLHK GEKLY+GL   +T HL  ++ + +  +    FL+ LN+ W DH  A+ MIRDILMYMDR ++   +   V+ LGL ++RD V+    I+  L+ TLL+++ RER GEV++RG +RN  +MLM L   G  VY++DFE  FLE+SA+F+++ESQ+F+       Y+KK++
Sbjct:   12 KDTKMRIRAFP--MTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVE 238          
BLAST of FC868753 vs. ExPASy Swiss-Prot
Match: CUL3_MOUSE (Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.055e-51
Identity = 106/229 (46.29%), Postives = 150/229 (65.50%), Query Frame = 2
Query:   50 KKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHL-TEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDL---GSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKLK 724
            K    +I AF   + +D KY    W +L++AI EI   N SGLSFEELYRNAY MVLHK GEKLY+GL   +T HL  ++ + +  +    FL+ LN+ W DH  A+ MIRDILMYMDR ++   +   V+ LGL ++RD V+    I+  L+ TLL+++ RER GEV++RG +RN  +MLM L   G  VY++DFE  FLE+SA+F+++ESQ+F+       Y+KK++
Sbjct:   12 KDTKMRIRAFP--MTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVE 238          
BLAST of FC868753 vs. ExPASy Swiss-Prot
Match: CUL3_HUMAN (Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 7.055e-51
Identity = 106/229 (46.29%), Postives = 150/229 (65.50%), Query Frame = 2
Query:   50 KKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHL-TEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDL---GSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKLK 724
            K    +I AF   + +D KY    W +L++AI EI   N SGLSFEELYRNAY MVLHK GEKLY+GL   +T HL  ++ + +  +    FL+ LN+ W DH  A+ MIRDILMYMDR ++   +   V+ LGL ++RD V+    I+  L+ TLL+++ RER GEV++RG +RN  +MLM L   G  VY++DFE  FLE+SA+F+++ESQ+F+       Y+KK++
Sbjct:   12 KDTKMRIRAFP--MTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVE 238          
BLAST of FC868753 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.055e-51
Identity = 106/229 (46.29%), Postives = 150/229 (65.50%), Query Frame = 2
Query:   50 KKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHL-TEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDL---GSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKLK 724
            K    +I AF   + +D KY    W +L++AI EI   N SGLSFEELYRNAY MVLHK GEKLY+GL   +T HL  ++ + +  +    FL+ LN+ W DH  A+ MIRDILMYMDR ++   +   V+ LGL ++RD V+    I+  L+ TLL+++ RER GEV++RG +RN  +MLM L   G  VY++DFE  FLE+SA+F+++ESQ+F+       Y+KK++
Sbjct:   12 KDTKMRIRAFP--MTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVE 238          
BLAST of FC868753 vs. ExPASy Swiss-Prot
Match: CUL3A_XENLA (Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.055e-51
Identity = 106/229 (46.29%), Postives = 150/229 (65.50%), Query Frame = 2
Query:   50 KKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHL-TEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDL---GSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKLK 724
            K    +I AF   + +D KY    W +L++AI EI   N SGLSFEELYRNAY MVLHK GEKLY+GL   +T HL  ++ + +  +    FL+ LN+ W DH  A+ MIRDILMYMDR ++   +   V+ LGL ++RD V+    I+  L+ TLL+++ RER GEV++RG +RN  +MLM L   G  VY++DFE  FLE+SA+F+++ESQ+F+       Y+KK++
Sbjct:   12 KDTKMRIRAFP--MTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVE 238          
BLAST of FC868753 vs. ExPASy Swiss-Prot
Match: CUL3_CAEEL (Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.584e-42
Identity = 88/195 (45.13%), Postives = 127/195 (65.13%), Query Frame = 2
Query:   95 VDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEI-CKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFI-PSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLG---SFVYQDDFEKHFLEVSADFYR 664
            +D +Y  +TW++L+ AI EI   N SGLSFEELYRNAY MVLHK GE+LY+GL   +  H+  +  + IE+   G FLE +   WADH  A+ MIRDILMYMDR ++  + H  PV+ LGL+ +R  ++  + I  R++D LLEL++ +R    IN   ++N   ML+ LG     VY+D+FE+  L+ ++D+YR
Sbjct:   22 IDEQYVTQTWELLKRAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGERLYNGLKDVIQDHMASVRIRIIESMNSGSFLETVAESWADHTVAMVMIRDILMYMDRIYVAQNNHVLPVYNLGLDAYRTEILRQNGIGDRIRDALLELIKLDRKSNQINWHGIKNACDMLISLGIDSRTVYEDEFERPLLKETSDYYR 216          
BLAST of FC868753 vs. ExPASy Swiss-Prot
Match: CUL4B_HUMAN (Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.450e-29
Identity = 70/218 (32.11%), Postives = 121/218 (55.50%), Query Frame = 2
Query:   68 IEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEICKSI--EAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTP-VHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYL 712
            I+ FK +  +   Y ++TW+ L+ A+  I N  +   + EELY+   N+  +K    LY  L      H+         ++    LFL++++R W +H + + MIR I +++DRT++      P + ++GL L+R  +I   K+Q +  D +L L++RER+GE I+R L+R++  ML DL   +YQD FE+ FLE +   Y  E Q+ ++  +  +YL
Sbjct:  181 IKNFKDKPKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQ--IYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYL 396          
BLAST of FC868753 vs. ExPASy Swiss-Prot
Match: CUL3_SCHPO (Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.920e-28
Identity = 83/236 (35.17%), Postives = 120/236 (50.85%), Query Frame = 2
Query:  122 WKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHL-------------------------------TEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVV-IHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGS-----FVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKK 718
            W++L+ AI +I+  + S LSFEELYRNAY +VLHK+GEKLY+ +   +   L                               T   +S+EAA    FL  L   W DH  ++QMI  +L Y+D+ +  S  K PV+E G+ ++R+VV ++S +I  +  +T+L LV  ER G  INR L+ +   ML  L S      +Y   F   FL  + +FY +ES   I      +YLKK
Sbjct:   26 WEVLQRAIGDIFQKSTSQLSFEELYRNAYILVLHKYGEKLYNHVQDVIRSRLKEETVPAIYKNYDASLLGNALLDIRKNDSYSTSWSRSLEAAH--RFLSSLVNSWKDHIVSMQMISSVLKYLDKVYSKSADKVPVNENGIYIFREVVLLNSFEIGEKCVETILILVYLERKGNTINRPLINDCLDMLNSLPSENKKETLYDVLFAPKFLSYTRNFYEIESSTVIGVFGVVEYLKK 259          
BLAST of FC868753 vs. ExPASy Swiss-Prot
Match: CUL4A_MOUSE (Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.442e-27
Identity = 71/222 (31.98%), Postives = 117/222 (52.70%), Query Frame = 2
Query:   56 RTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEICKSI--EAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTP-VHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYL 712
            R   I+ F+ R  +   Y + TW+ L  A+  I +  +   + EELY+   N+  HK    LY  L      H+         ++    LFL+++N  W DH + + MIR I +++DRT++      P + ++GL L+R+ +I    +Q++  D +L L+ RERSGE ++R L+R++  ML DL   VY+D FE  FLE +   Y  E Q  ++  +  +YL
Sbjct:   41 RKLVIKNFRDRPRLPDNYTQDTWRKLHEAVKAIQSSTSIRYNLEELYQAVENLCSHKVSPTLYKQLRQVCEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRNHIISDRMVQSKTIDGILLLIGRERSGEAVDRSLLRSLLSMLSDLQ--VYKDSFELKFLEETNCLYAAEGQRLMQDREVPEYL 260          
The following BLAST results are available for this feature:
BLAST of FC868753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CUL3_DICDI2.193e-5247.47Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]
CUL3_XENTR7.055e-5146.29Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1[more]
CUL3_MOUSE7.055e-5146.29Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1[more]
CUL3_HUMAN7.055e-5146.29Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2[more]
CUL3B_XENLA7.055e-5146.29Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1[more]
CUL3A_XENLA7.055e-5146.29Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1[more]
CUL3_CAEEL4.584e-4245.13Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 S... [more]
CUL4B_HUMAN4.450e-2932.11Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3[more]
CUL3_SCHPO4.920e-2835.17Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1... [more]
CUL4A_MOUSE2.442e-2731.98Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31004D03EF AbioticL1 Citrus clementina cDNA clone C31004D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868753 ID=FC868753; Name=FC868753; organism=Citrus clementina; type=EST; length=742bp
GAACTAAAAGAAAGCGAGTGTGAGCGATTGAGAAGAGATGAGTGCTCCGA
AGAAGAGGACTTTCCAAATAGAGGCGTTTAAGCACCGGGTCGTGGTGGAT
CCAAAATACGCAGAGAAGACATGGAAGATTTTGGAGCATGCGATTCATGA
GATTTACAATCATAACGCCAGTGGGCTTAGCTTTGAGGAGCTTTATAGGA
ATGCCTACAACATGGTGCTGCACAAATTTGGTGAGAAACTTTACTCTGGA
CTTGTGACAACAATGACTTTTCATCTCACAGAAATATGCAAATCAATTGA
AGCTGCTCAGGGGGGTCTATTTTTGGAAGAGCTGAACAGGAAATGGGCAG
ATCATAACAAGGCTTTGCAAATGATCCGGGACATATTGATGTACATGGAT
AGGACATTCATCCCAAGCACCCATAAAACCCCTGTACATGAGCTAGGGTT
AAATCTGTGGAGGGATGTTGTTATACACTCCAGCAAAATCCAGACTAGGC
TACAGGATACACTTCTTGAACTTGTGCAGAGAGAAAGGAGTGGTGAAGTT
ATAAACAGGGGCTTGATGAGAAACATTACAAAAATGCTGATGGATTTAGG
TTCTTTTGTTTACCAGGATGACTTTGAGAAGCATTTCCTCGAAGTCTCAG
CTGATTTTTACCGTCTCGAGTCTCAAGAGTTTATTGAGTCCTGTGATTGT
GGAGATTATCTTAAGAAGCTGAAAGACGTCTAAATGAGGAAA
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