FC868762

Overview
NameFC868762
Unique NameFC868762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig629 contig Ccv1_Contig629:77..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868762 vs. ExPASy Swiss-Prot
Match: ZN622_CHICK (Zinc finger protein 622 OS=Gallus gallus GN=ZNF622 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 45/126 (35.71%), Postives = 63/126 (50.00%), Query Frame = 3
Query:   30 MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVT-EXXXXXXXXXXXXEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHI---MRASQGTSNEEK---EKVIIKPIPLRDVNK 386
            M   TC +C   F D   Q+ HYK+DWHRYNLKRKVA +P VT E             + ++    TY C +C K + +  A   HL S+ H+    +A Q  S + K   EK + K + +  V+K
Sbjct:    1 MATYTCITCRVAFKDADIQRAHYKTDWHRYNLKRKVADMPPVTAENFQERVLAQRAVAEERDKVTATY-CTVCSKRFSTFNAYENHLKSKKHLELEKKAVQAVSKKVKILNEKNLEKGLAVESVDK 125          
BLAST of FC868762 vs. ExPASy Swiss-Prot
Match: ZN622_RAT (Zinc finger protein 622 OS=Rattus norvegicus GN=Znf622 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 41/125 (32.80%), Postives = 58/125 (46.40%), Query Frame = 3
Query:   30 MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEXXXXXXXXXXXXEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHI---MRASQGTSNEEK---EKVIIKPIPLRDVNK 386
            M   TC +C   F D   Q+ HYK+DWHRYNL+RKVA +  VT                + +      C +C K + +  A   HL SR H+    +A Q  S + +   EK + K + +  VNK
Sbjct:    1 MATYTCITCRVAFRDAEMQRAHYKTDWHRYNLRRKVANMAPVTAEGFQERVRAQRAVAEEESKGTATYCTVCSKKFATFNAYENHLKSRRHVELEKKAVQAVSRQVEMMNEKNLEKGLGVDSVNK 125          
BLAST of FC868762 vs. ExPASy Swiss-Prot
Match: ZN622_MOUSE (Zinc finger protein 622 OS=Mus musculus GN=Znf622 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 40/96 (41.67%), Postives = 48/96 (50.00%), Query Frame = 3
Query:   30 MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVT-----EXXXXXXXXXXXXEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSH 302
            M  LTC +C   F D   Q+ HYK+DWHRYNL+RKVA +  VT     E            E +K A   TY C  CGK + +  A   HL SR H
Sbjct:    1 MAALTCITCRVAFRDAELQRAHYKTDWHRYNLRRKVAAMAPVTAEGFQERVRAQRAVAEAAEASKGAA--TY-CTACGKKFATFNAYENHLGSRRH 93          
The following BLAST results are available for this feature:
BLAST of FC868762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZN622_CHICK3.699e-1235.71Zinc finger protein 622 OS=Gallus gallus GN=ZNF622... [more]
ZN622_RAT4.090e-1132.80Zinc finger protein 622 OS=Rattus norvegicus GN=Zn... [more]
ZN622_MOUSE5.342e-1141.67Zinc finger protein 622 OS=Mus musculus GN=Znf622 ... [more]
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Properties
Property NameValue
Genbank descriptionC31004E02EF AbioticL1 Citrus clementina cDNA clone C31004E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868762 ID=FC868762; Name=FC868762; organism=Citrus clementina; type=EST; length=734bp
GGGAACGCCAAGGAGAGGAAAGACCCAACATGCCGGGGCTGACCTGCAAT
TCATGTAACAGAGAATTCAATGACGACGCCGAGCAGAAGCTTCACTACAA
GTCCGATTGGCACCGCTACAATCTCAAACGCAAGGTGGCCGGGGTTCCAG
GAGTGACAGAAGCTCTATTTCTGGCTAGACAAGCGGCACTTGCTCAAGAG
AAAAATAAGAATGCGACCCCAATGACCTACAGTTGTGGTCTTTGTGGAAA
AGGGTACAGAAGCTCTAAGGCTCTTGCTCAGCATCTCAACTCACGAAGCC
ACATTATGCGGGCTTCTCAAGGAACGAGTAATGAAGAGAAGGAGAAGGTA
ATAATTAAGCCAATTCCGCTTCGTGATGTAAATAAGCCTCCTCGGAAAAG
AGAAGCAAACAATGAAGAAAGTGAAGATAGTGATGATGAGTGGGAAGAGG
TTGGTCCAGATGAAGTATTGGTTAGTGAGGCCACAAATTCTCTGACCAAT
TTGAATGTTGGGTCTCCCGCTGATGATGACTTGGAGGAGGATGACGATGA
TGGTGCCTTTGAGGAGTTCGATCCAGCATGTTGCTTCATGTGTGATCTTC
CGCACGATGCAATTGAGAACTGCATGGTTCACATGCACAAGTGTCATGGG
TTCTTTATTCCTGATGNTGAGTATTTGAAGGATCCAAAAGGCCTGCTTAC
TTATCTTGGTCTAAGGTTAAGAGGGATTTCATGT
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