FC868764

Overview
NameFC868764
Unique NameFC868764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9463 contig Ccv1_Contig9463:26..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_SPIOL (Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea GN=RPE PE=1 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.408e-90
Identity = 171/205 (83.41%), Postives = 185/205 (90.24%), Query Frame = 2
Query:   98 MSTGSLCSST--TQINGFTGGFMLQKT--NLNQPSSLSFTRRRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            MS  SLC ST  +QINGF GG  ++K   + + P+SL+FTRR++ T+VKA++RVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE +STIHLHRT+NQIK LGAKAGVVLNP T LS IE VLDVVDLVLIMSVNPGFG
Sbjct:    1 MSAASLCQSTLQSQINGFCGGLNIRKLQPSTSSPNSLTFTRRKVQTLVKATSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSLGAKAGVVLNPGTPLSTIEYVLDVVDLVLIMSVNPGFG 205          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_SOLTU (Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.318e-88
Identity = 164/200 (82.00%), Postives = 179/200 (89.50%), Query Frame = 2
Query:  101 STGSLCSSTTQINGFTGGFMLQKTNLNQPSSLSFTRRRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            S GS     +QI+GF G   LQK + + P+SL+FTRRRI T+V AS+RVDKFSKSDIIVSPSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVVD+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVLNP T L+AIE VLD VDLVLIMSVNPGFG
Sbjct:    1 SLGSSTLLQSQISGFGGSQKLQKISFSNPNSLTFTRRRIQTVVNASSRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFG 200          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_ORYSJ (Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=RPE PE=1 SV=2)

HSP 1 Score: 295.049 bits (754), Expect = 2.491e-79
Identity = 150/169 (88.76%), Postives = 160/169 (94.67%), Query Frame = 2
Query:  194 LSFTRRRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            L+F+  R    V+AS+RVDKFSK+DIIVSPSILSANF+KLGEQVKAVE+AGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVLNPAT L+AI+ VLDVVDLVLIMSVNPGFG
Sbjct:   26 LAFSSPRKAFRVRASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLTAIDYVLDVVDLVLIMSVNPGFG 194          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_SYNY3 (Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803) GN=rpe PE=1 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.626e-54
Identity = 103/145 (71.03%), Postives = 125/145 (86.21%), Query Frame = 2
Query:  266 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            +I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T   LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI++LG KAG VLNP+T L  +E VL V DL+LIMSVNPGFG
Sbjct:    4 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFG 148          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_BACSU (Ribulose-phosphate 3-epimerase OS=Bacillus subtilis GN=rpe PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.640e-48
Identity = 96/144 (66.67%), Postives = 115/144 (79.86%), Query Frame = 2
Query:  269 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            I V+PSILSA+FA LG ++K VE  G D IH+DVMDG FVPNITIGPL+V+A+RPVTDLPLDVHLMI EP++ +P F KAGADI+SVH E  +  HLHRT+  IK+ G KAGVVLNP T +  IE V D +DLVL+M+VNPGFG
Sbjct:    2 IKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLPLDVHLMIEEPDRYIPAFAKAGADILSVHAE--ACPHLHRTIQLIKEQGVKAGVVLNPHTPVQVIEHVFDDLDLVLLMTVNPGFG 143          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPEC_RALEH (Ribulose-phosphate 3-epimerase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEC PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.077e-40
Identity = 82/148 (55.41%), Postives = 110/148 (74.32%), Query Frame = 2
Query:  257 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            S+  I ++PSILSA+FA+LGE+V A+E  G D +H DVMD  +VPN+TIGPLV +A+RP+  +P+DVHLM+   +  +P F KAGA+I+S H E S   H+ RT+  I+D G KAG+VLNPAT L  ++  LD +DLVL+MSVNPGFG
Sbjct:   12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVPNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPLFAKAGANIISFHPEASR--HVDRTIGLIRDHGCKAGLVLNPATPLGWLDHTLDQLDLVLLMSVNPGFG 157          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPEP_RALEH (Ribulose-phosphate 3-epimerase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEP PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.929e-39
Identity = 81/148 (54.73%), Postives = 110/148 (74.32%), Query Frame = 2
Query:  257 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            S+  I ++PSILSA+FA+LGE+V A+E  G D +H DVMD  +V N+TIGPLV +A+RP+  +P+DVHLM+   +  +P F KAGA+++S H E S   H+ RT+  I+D G KAG+VLNPAT LS ++  LD +DLVL+MSVNPGFG
Sbjct:   12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVSNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPMFAKAGANLISFHPEASR--HVDRTIGLIRDHGCKAGLVLNPATPLSWLDHTLDKLDLVLLMSVNPGFG 157          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_BUCAP (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpe PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.862e-37
Identity = 76/143 (53.15%), Postives = 105/143 (73.43%), Query Frame = 2
Query:  275 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            ++ SILSA+FA+LGE  K    AG DWIH DVMD  +VPN+T+GP+++ ALR     +P+DVHLM+   +  +P F +AGAD ++ H E  ST H+ RTLN IK+ G KAG+ LNPATSL+ ++ V++ +DL+L+MSVNPGFG
Sbjct:    6 LASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYNITVPIDVHLMVKPVDNLIPQFAEAGADFITFHPE--STDHIDRTLNLIKECGCKAGLALNPATSLNFLDYVMEKLDLILLMSVNPGFG 146          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_AQUAE (Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus GN=rpe PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.809e-36
Identity = 76/142 (53.52%), Postives = 102/142 (71.83%), Query Frame = 2
Query:  272 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 697
            +++PSIL+ ++  +GEQ++A    G D +H DVMDG FVPNIT G  ++  +R    LP+D HLMI  P++ +P F++AGA+ +SVH E  +  H+HRTL  IK+LGAKAGVV+NP TSLSAIE  L   D VL+MSVNPGF
Sbjct:    3 LLAPSILAGDWWCIGEQIQATIRGGADILHYDVMDGHFVPNITAGYEILSHIRKRASLPIDAHLMIENPDKYIPKFVEAGANWISVHIE--NNYHIHRTLQLIKELGAKAGVVVNPGTSLSAIEEALYYADYVLLMSVNPGF 142          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_SERMA (Ribulose-phosphate 3-epimerase OS=Serratia marcescens GN=rpe PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.586e-36
Identity = 77/144 (53.47%), Postives = 103/144 (71.53%), Query Frame = 2
Query:  272 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            +++PSILSA+FA+LGE    V  AG D +H DVMD  +VPN+TIGP+V +ALR      P+DVHLM+   ++ VPDF KAGA  +S H E S   H+ RT+  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFG
Sbjct:    5 LIAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCEALRNYGITAPIDVHLMVKPVDRIVPDFAKAGASYISFHPEASE--HVDRTIQLIKEHGCKAGLVFNPATPLSYLDYVMDKIDVILLMSVNPGFG 146          
The following BLAST results are available for this feature:
BLAST of FC868764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RPE_SPIOL1.408e-9083.41Ribulose-phosphate 3-epimerase, chloroplastic OS=S... [more]
RPE_SOLTU1.318e-8882.00Ribulose-phosphate 3-epimerase, chloroplastic (Fra... [more]
RPE_ORYSJ2.491e-7988.76Ribulose-phosphate 3-epimerase, chloroplastic OS=O... [more]
RPE_SYNY31.626e-5471.03Ribulose-phosphate 3-epimerase OS=Synechocystis sp... [more]
RPE_BACSU8.640e-4866.67Ribulose-phosphate 3-epimerase OS=Bacillus subtili... [more]
RPEC_RALEH5.077e-4055.41Ribulose-phosphate 3-epimerase, chromosomal OS=Ral... [more]
RPEP_RALEH1.929e-3954.73Ribulose-phosphate 3-epimerase, plasmid OS=Ralston... [more]
RPE_BUCAP6.862e-3753.15Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_AQUAE5.809e-3653.52Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus... [more]
RPE_SERMA7.586e-3653.47Ribulose-phosphate 3-epimerase OS=Serratia marcesc... [more]

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Properties
Property NameValue
Genbank descriptionC31004E04EF AbioticL1 Citrus clementina cDNA clone C31004E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868764 ID=FC868764; Name=FC868764; organism=Citrus clementina; type=EST; length=702bp
TCGCCGGGGAACGAAAACAGATACCATATTTCCTCTCACTAGCCATAACC
AAACCAACAGTTACGTTTTAGAGAGAGAAACAAAAAAGAGCGTCAAGATG
TCTACAGGCTCGCTGTGTTCATCAACGACTCAGATCAATGGCTTTACAGG
TGGTTTCATGTTGCAGAAAACCAATCTTAATCAGCCCAGTTCACTTAGTT
TTACAAGGAGGAGAATTCATACTATAGTGAAGGCATCAGCTCGTGTGGAT
AAGTTCTCGAAAAGTGATATTATTGTTTCTCCATCTATTCTCTCTGCTAA
TTTCGCGAAGTTAGGCGAGCAGGTAAAAGCAGTGGAATTGGCTGGTTGTG
ATTGGATTCATGTTGATGTCATGGATGGTCGTTTTGTTCCAAACATTACA
ATTGGACCTCTTGTGGTTGATGCCTTGCGCCCTGTGACAGACCTTCCTTT
GGATGTTCATTTGATGATTGTCGAACCTGAACAACGAGTGCCTGATTTTA
TCAAGGCTGGAGCAGACATAGTCAGCGTCCACTGTGAGCAATCATCCACC
ATTCATTTGCACCGCACTCTTAACCAAATAAAAGATTTGGGAGCTAAAGC
TGGAGTTGTCCTTAACCCTGCTACCTCACTGAGTGCAATAGAATGTGTCC
TTGATGTGGTTGATCTTGTCTTGATCATGTCGGTGAACCCTGGCTTTGGT
GG
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