FC868769

Overview
NameFC868769
Unique NameFC868769
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14435 contig Ccv1_Contig14435:8..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868769 vs. ExPASy Swiss-Prot
Match: APC10_ARATH (Anaphase-promoting complex subunit 10 OS=Arabidopsis thaliana GN=At2g18290 PE=2 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 2.229e-59
Identity = 108/143 (75.52%), Postives = 121/143 (84.62%), Query Frame = 1
Query:  277 MATESSESEKEGKITGGNHQLLIDDDLREMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKNCGTCQPTGWVYISLSGNDPRDTFVNTFM 705
            MATESSESE+EGKI+GGN++L+IDDDLREMGK AAWSVSSCKPGNGV+ LRDDNL+TYWQSDG QPHL+NI             YVDFKLDESYTPSKIS+RAGDGFHNLKEIK+    +PTGWV +SLSG DPR+TFVNTFM
Sbjct:    1 MATESSESEEEGKISGGNYKLIIDDDLREMGKNAAWSVSSCKPGNGVTTLRDDNLETYWQSDGLQPHLINIQFQKKVKLQLVVLYVDFKLDESYTPSKISIRAGDGFHNLKEIKSVELVKPTGWVCLSLSGTDPRETFVNTFM 143          
BLAST of FC868769 vs. ExPASy Swiss-Prot
Match: APC10_MOUSE (Anaphase-promoting complex subunit 10 OS=Mus musculus GN=Anapc10 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.361e-32
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  355 LREMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKNCGTCQPTGWVYISLSGNDPRDTFVNTFM 705
            +RE+G +A WS+SSCKPG GV  LRDDNL+TYWQSDG+QPHLVNI             Y D+K DESYTPSKISVR G+ FHNL+EI+     +P+GW+++ L+ N  + T   TFM
Sbjct:   22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFM 136          
BLAST of FC868769 vs. ExPASy Swiss-Prot
Match: APC10_HUMAN (Anaphase-promoting complex subunit 10 OS=Homo sapiens GN=ANAPC10 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.361e-32
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  355 LREMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKNCGTCQPTGWVYISLSGNDPRDTFVNTFM 705
            +RE+G +A WS+SSCKPG GV  LRDDNL+TYWQSDG+QPHLVNI             Y D+K DESYTPSKISVR G+ FHNL+EI+     +P+GW+++ L+ N  + T   TFM
Sbjct:   22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFM 136          
BLAST of FC868769 vs. ExPASy Swiss-Prot
Match: APC10_BOVIN (Anaphase-promoting complex subunit 10 OS=Bos taurus GN=ANAPC10 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.322e-32
Identity = 64/117 (54.70%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  355 LREMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKNCGTCQPTGWVYISLSGNDPRDTFVNTFM 705
            +RE+G +A WS+SSCKPG GV  LRDDNL+TYWQSDG+QPHLVN+             Y D+K DESYTPSKISVR G+ FHNL+EI+     +P+GW+++ L+ N  + T   TFM
Sbjct:   22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNLQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFM 136          
BLAST of FC868769 vs. ExPASy Swiss-Prot
Match: APC10_DROME (Anaphase-promoting complex subunit 10 OS=Drosophila melanogaster GN=CG11419 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 58/117 (49.57%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  355 LREMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKNCGTCQPTGWVYISLSGNDPRDTFVNTFM 705
            +RE+G +A WS+SSCKPG GV  LRD+ +DTYWQSDG  PHLVNI             Y D+KLDESYTPS+IS+R+G  F++L+E++     +PTGWV I +   + +   + TFM
Sbjct:   30 VREVGAQAVWSLSSCKPGFGVERLRDNIMDTYWQSDGQLPHLVNIQFHKRTNISQIYIYTDYKLDESYTPSRISIRSGTNFNDLQELQVMDLTEPTGWVQIPIKDGNVKS--IRTFM 144          
BLAST of FC868769 vs. ExPASy Swiss-Prot
Match: APC10_DICDI (Anaphase-promoting complex subunit 10 OS=Dictyostelium discoideum GN=anapc10 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 1
Query:  361 EMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKNCGTCQPTGWVYISLSGND 675
            E+GK A+WSVSS KPG+GV  LRD+NLDT+WQSD  QPH + I             + D+KLDESYTP KIS++AG   H+L+EI      +P+GW+ I LS N+
Sbjct:   27 EIGKHASWSVSSAKPGSGVEQLRDNNLDTFWQSDAQQPHHITIQFPKKCYIENLLIHCDYKLDESYTPCKISIKAGTILHDLQEIILTELEEPSGWINIPLSFNN 131          
BLAST of FC868769 vs. ExPASy Swiss-Prot
Match: APC10_SCHPO (Anaphase-promoting complex subunit 10 OS=Schizosaccharomyces pombe GN=apc10 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 1
Query:  361 EMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKNCGTCQPTGWVYI 657
            ++G  A W+ SS K G  +  +RDDN+DTYWQSDG+QPH ++I             Y+ + LDESYTPS + + AG GF +L+ +      +PTGWV++
Sbjct:   25 DIGNLAQWTCSSEKSGFPIRLVRDDNIDTYWQSDGSQPHTIHIKFVKRVSIKYVSMYLQYTLDESYTPSTLRISAGTGFQDLEIVTTVQVEEPTGWVHV 123          
The following BLAST results are available for this feature:
BLAST of FC868769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
APC10_ARATH2.229e-5975.52Anaphase-promoting complex subunit 10 OS=Arabidops... [more]
APC10_MOUSE1.361e-3255.56Anaphase-promoting complex subunit 10 OS=Mus muscu... [more]
APC10_HUMAN1.361e-3255.56Anaphase-promoting complex subunit 10 OS=Homo sapi... [more]
APC10_BOVIN2.322e-3254.70Anaphase-promoting complex subunit 10 OS=Bos tauru... [more]
APC10_DROME1.722e-2749.57Anaphase-promoting complex subunit 10 OS=Drosophil... [more]
APC10_DICDI3.040e-2451.43Anaphase-promoting complex subunit 10 OS=Dictyoste... [more]
APC10_SCHPO3.846e-1942.42Anaphase-promoting complex subunit 10 OS=Schizosac... [more]
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Properties
Property NameValue
Genbank descriptionC31004E10EF AbioticL1 Citrus clementina cDNA clone C31004E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868769 ID=FC868769; Name=FC868769; organism=Citrus clementina; type=EST; length=706bp
CGAAGCATGGTTTTGTCCTTTGTAAATAACAAACGGAGACGCCCCCTTTA
GATTCGAGGAAGTAGAATAGATCAACAACTACCCTTTCCCCAATAAATCC
CAGCAAAATCGACATCAGTCCATCCAAAGCCATCGGAGCGGGTTAGCATT
TGCGGTTGCATTTTCTGTTAGTTGAATTATTAGCTGGAAGACGAGACTCT
TATTATGCATATCATTCGCTGAAACTTTGCTGCTTCTTCTGCACATGTAG
AGTCAATTATTGTGTGGAATAAGCTAATGGCAACAGAGTCATCAGAATCA
GAAAAAGAAGGGAAGATCACTGGAGGAAATCATCAATTATTAATTGATGA
CGATCTTAGAGAAATGGGAAAGAAAGCTGCTTGGAGTGTCAGCTCTTGCA
AGCCTGGCAATGGCGTCTCTGCTCTTCGCGATGACAATCTCGATACTTAT
TGGCAATCGGACGGTGCTCAGCCTCATTTGGTTAATATTCAGTTCCAGAA
GAAAGTTAAGTTGCAATTAGTTGTGCTTTATGTGGATTTTAAGCTTGATG
AGAGCTATACACCTAGTAAAATCTCTGTTCGAGCAGGTGATGGTTTTCAT
AACTTGAAGGAGATAAAAAACTGTGGAACTTGTCAGCCAACTGGGTGGGT
CTATATATCGTTATCTGGAAATGATCCTAGGGACACTTTTGTCAACACTT
TTATGT
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