FC868772

Overview
NameFC868772
Unique NameFC868772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868772_ssr140 microsatellite FC868772_ssr140:140..164. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9394 contig Ccv1_Contig9394:1..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868772 vs. ExPASy Swiss-Prot
Match: UAP1_ARATH (Probable UDP-N-acetylglucosamine pyrophosphorylase OS=Arabidopsis thaliana GN=At2g35020 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.370e-50
Identity = 94/116 (81.03%), Postives = 107/116 (92.24%), Query Frame = 1
Query:  355 PPQALLERLKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLRSQGLPVAAIEPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPR 702
            P QAL+ERLKDYGQED F+LWDELSP+ERD L++DIE+LDLPR+DRIIRCSL SQGLPVAAIEPVPE  VSTVEERT ++RE+WWKMGLKAI +GKL V+LLSGGQGTRLGSSDP+
Sbjct:   29 PHQALVERLKDYGQEDVFSLWDELSPEERDLLLRDIENLDLPRIDRIIRCSLHSQGLPVAAIEPVPENCVSTVEERTKEDREKWWKMGLKAIYEGKLGVVLLSGGQGTRLGSSDPK 144          
BLAST of FC868772 vs. ExPASy Swiss-Prot
Match: UAP1L_XENTR (UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 OS=Xenopus tropicalis GN=uap1l1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 1
Query:  376 RLKDYGQEDAFALWDELSPDERDHLVKDIESLDLPR-----VDRIIRCSLRSQGLPVAA---IEPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPR 702
            R ++ GQ   F  WDELSP E++ L++ +E L+ PR       R     +R    P      ++PVP   + +V      E ERW + G   I+  K+AVLLL+GGQGTRLG + P+
Sbjct:   16 RAEESGQGQLFRFWDELSPAEKEALLEQLEMLE-PRELREHCQRAREAYVRESSAPQRLDDRMQPVPPEFLGSVRHSGTGELERWEREGFHQIAQNKVAVLLLAGGQGTRLGVTYPK 131          
BLAST of FC868772 vs. ExPASy Swiss-Prot
Match: UAP1_MOUSE (UDP-N-acetylhexosamine pyrophosphorylase OS=Mus musculus GN=Uap1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 1
Query:  367 LLERLKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLRS------QGLPVAAIEPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPR 702
            L +RL   GQE     W+ELS  ++  L  ++++++   ++   R ++        Q    A +EPVP R V     R  ++ + W   GL  IS  K+AVLLL+GGQGTRLG S P+
Sbjct:    6 LKQRLSQAGQEHLLQFWNELSEAQQVELYMELQAMNFEELNSFFRKAIGEFDRSSHQEKVDARMEPVP-RQVLGSATRDQEQLQAWESEGLSQISQNKVAVLLLAGGQGTRLGVSYPK 122          
The following BLAST results are available for this feature:
BLAST of FC868772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UAP1_ARATH3.370e-5081.03Probable UDP-N-acetylglucosamine pyrophosphorylase... [more]
UAP1L_XENTR1.635e-1237.61UDP-N-acetylhexosamine pyrophosphorylase-like prot... [more]
UAP1_MOUSE6.869e-1135.59UDP-N-acetylhexosamine pyrophosphorylase OS=Mus mu... [more]
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Properties
Property NameValue
Genbank descriptionC31004F01EF AbioticL1 Citrus clementina cDNA clone C31004F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868772 ID=FC868772; Name=FC868772; organism=Citrus clementina; type=EST; length=726bp
GATTGGAGACACAGAACAGAAGGCAGAAAAGTCAGTGGTGACACACACGC
ACCAGACCAGCACCACCAACACATCCAACACCAACTGATCAATTGATTCT
TGTCTTCCTCGCTACTGTACTAATCCCAGTCCCTTCCTCTTTTATTTTAT
TTTATTTTATTTTATTTATATTATAAATCCAACACCACCGACGATTTGAG
AGCAAACAAAAATTGAGCGACCGAGAGAGATCTAGAGAGCAAGTGTGAGA
GGATAAATTAGAAAAGAAAAAAAAAAGAAATAGAAATGAGGGAACCGACG
GTGGTTGGGACGGAGAGCAACGGTGGGTCGGTGGGGTCAATAGCACAGTC
CCCGCCACCTCAGGCCTTGCTAGAGAGGCTCAAGGATTACGGCCAAGAAG
ACGCCTTTGCCCTCTGGGATGAGCTCTCCCCCGACGAACGCGACCACCTC
GTCAAGGACATCGAGAGCTTAGATCTTCCGAGAGTCGATCGGATCATTCG
ATGTTCACTTCGATCTCAAGGGCTTCCGGTGGCCGCAATTGAGCCGGTGC
CGGAGAGAAGTGTGTCAACGGTAGAGGAGAGAACCATGGACGAAAGGGAA
AGATGGTGGAAGATGGGTTTGAAGGCCATCTCTGATGGCAAATTGGCTGT
TTTGCTTTTATCTGGTGGCCAGGGAACTCGACTCGGAAGTTCAGATCCAA
GGGATGTGTTAATGTGGAACTTCCTT
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