FC868776

Overview
NameFC868776
Unique NameFC868776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868776_ssr22 microsatellite FC868776_ssr22:22..33. BLAST: Citrus ESTs to Prunus persica proteins V1
FC868776_ssr39 microsatellite FC868776_ssr39:39..53. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10270 contig Ccv1_Contig10270:25..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC868776 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.108e-77
Identity = 147/200 (73.50%), Postives = 157/200 (78.50%), Query Frame = 2 
Query:   56 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXXQGPGEKAVPAPQPAEVET 655
            MVSLKLQKRL+ASV+KCG+GKVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR+MK AK KGRHSGYGKRKGTREARLPTK+              KYRE+KKIDKHMYHDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN                +GPG    P   PA   T
Sbjct:    1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDVAPVAAPAPAAT 200
[Close]
BLAST of FC868776 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.861e-76
Identity = 147/201 (73.13%), Postives = 156/201 (77.61%), Query Frame = 2 
Query:   56 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXXQGP--GEKAVPAPQPAEVE 652
            MVSLK+QKRL+ASV+KCG+GKVWLDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR + EAKRKGRHSGYGKRKGTREARLPTKI              KYRESKKID+HMYHDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFEAKR KN                QGP  GE   PA  P + E
Sbjct:    1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREERLAQGPGGGETTTPAGAPQQPE 201
[Close]
BLAST of FC868776 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 280.796 bits (717), Expect = 4.961e-75
Identity = 147/201 (73.13%), Postives = 158/201 (78.61%), Query Frame = 2 
Query:   56 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXXQGPG---EKAVPAPQPAEV 649
            MVSLKLQKRL++SVLKCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR++  AKRKGRHSGYGKRKGTREARLPTK+              KYRE+KKID+HMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN                +GPG     A P  Q AEV
Sbjct:    1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDIPAAAPPAQTAEV 201
[Close]
BLAST of FC868776 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 3.816e-59
Identity = 110/165 (66.67%), Postives = 129/165 (78.18%), Query Frame = 2 
Query:   56 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 550
            M SLKLQKRL+ASVL+CG+ KVWLDPNE+NEI+  NSRQNIRKL+KDG II+KP  +HSR R R+  EA+RKGRH G+GKRKGT  AR+PTK+              KYR+SKKID+H+YHD+YMK KGNVFKNKRVLME IHK KAEK R K L+DQ EA+R K
Sbjct:    1 MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQK 165
[Close]
BLAST of FC868776 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.315e-56
Identity = 106/165 (64.24%), Postives = 128/165 (77.58%), Query Frame = 2 
Query:   56 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 550
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165
[Close]
BLAST of FC868776 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.315e-56
Identity = 105/165 (63.64%), Postives = 128/165 (77.58%), Query Frame = 2 
Query:   56 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 550
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165
[Close]
BLAST of FC868776 vs. ExPASy Swiss-Prot
Match: RL19_PONAB (60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.315e-56
Identity = 105/165 (63.64%), Postives = 128/165 (77.58%), Query Frame = 2 
Query:   56 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 550
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165
[Close]
BLAST of FC868776 vs. ExPASy Swiss-Prot
Match: RL19_MOUSE (60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.315e-56
Identity = 105/165 (63.64%), Postives = 128/165 (77.58%), Query Frame = 2 
Query:   56 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 550
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165
[Close]
BLAST of FC868776 vs. ExPASy Swiss-Prot
Match: RL19_MACFA (60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.315e-56
Identity = 105/165 (63.64%), Postives = 128/165 (77.58%), Query Frame = 2 
Query:   56 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 550
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165
[Close]
BLAST of FC868776 vs. ExPASy Swiss-Prot
Match: RL19_HUMAN (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.315e-56
Identity = 105/165 (63.64%), Postives = 128/165 (77.58%), Query Frame = 2 
Query:   56 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 550
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165
The following BLAST results are available for this feature:
BLAST of FC868776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL191_ARATH3.108e-7773.5060S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL192_ARATH5.861e-7673.1360S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL193_ARATH4.961e-7573.1360S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL19_DROME3.816e-5966.6760S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19_XENLA2.315e-5664.2460S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_RAT2.315e-5663.6460S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]
RL19_PONAB2.315e-5663.6460S ribosomal protein L19 OS=Pongo abelii GN=RPL19... [more]
RL19_MOUSE2.315e-5663.6460S ribosomal protein L19 OS=Mus musculus GN=Rpl19... [more]
RL19_MACFA2.315e-5663.6460S ribosomal protein L19 OS=Macaca fascicularis G... [more]
RL19_HUMAN2.315e-5663.6460S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]

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Properties
Property NameValue
Genbank descriptionC31004F07EF AbioticL1 Citrus clementina cDNA clone C31004F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868776 ID=FC868776; Name=FC868776; organism=Citrus clementina; type=EST; length=713bp
TGTTGGTTGGCCACCGCTCGCGAGAGAGAGAGAGGGGGAGAGAAGAGAAG
AGAAAATGGTGTCGTTGAAGTTACAGAAGCGGCTCTCCGCTAGCGTCCTC
AAGTGCGGACGTGGCAAGGTCTGGCTTGACCCTAATGAGGTCAACGAAAT
CTCCATGGCCAACTCCAGGCAGAACATTAGGAAATTGGTGAAGGATGGTT
TCATCATCAGGAAGCCAACAAAGATCCACTCCCGTTCTCGTGCTCGCAGA
ATGAAGGAAGCCAAGAGGAAGGGCCGTCACTCTGGATATGGTAAGAGAAA
GGGTACTAGGGAGGCGAGGCTTCCCACCAAAATCCTCTGGATGAGAAGGA
TGCGTGTGCTCAGGCGGTTGCTCCGCAAATACCGTGAGTCGAAGAAAATT
GACAAGCACATGTACCATGACATGTACATGAAGGTCAAGGGTAATGTATT
TAAGAACAAGCGTGTCCTCATGGAGAGTATCCACAAGTCAAAGGCTGAGA
AGGCAAGAGAGAAGACTCTTTCTGACCAGTTTGAGGCTAAGCGCGCCAAG
AACAAGGCCAGCAGGGAGAGAAAGCTGGCCAGGAGAGAAGAGCGACTAGC
ACAGGGACCTGGAGAGAAGGCAGTACCAGCACCCCAACCGGCTGAAGTAG
AAACTTGAATTTTACTTGATTTGAGTCATTGTGCAACTGAAATTTGGCGT
ATTATCATTTCTT
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