FC868804

Overview
NameFC868804
Unique NameFC868804
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14925 contig Ccv1_Contig14925:58..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868804 vs. ExPASy Swiss-Prot
Match: AAPC_CENCI (Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.614e-42
Identity = 84/146 (57.53%), Postives = 105/146 (71.92%), Query Frame = 1
Query:  214 IVHDKDGLPRIILTEPTGSSAEVLLYGGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLP--PANNQSTVDLILKSTEEDIKAWPRGFELRLRISISP-GQLTLIPRVRNVD 642
            +V    GL +++L       AE+ LYGGQV SWKN+  EELLF+SSK+ +KPPKAIRGGIP+C PQFG  G LEQHGFARNRFWS+D D  PLP  PA  ++ VDLIL+  EED+K WP  FE RLR+++ P G L+L  R+RN +
Sbjct:   26 LVKTPSGLEKVVLRGARNCCAEIYLYGGQVTSWKNDNGEELLFLSSKAIFKPPKAIRGGIPICLPQFGTHGNLEQHGFARNRFWSIDNDPPPLPVNPA-IKAFVDLILRPAEEDLKIWPHSFEFRLRVALGPSGDLSLTSRIRNTN 170          
BLAST of FC868804 vs. ExPASy Swiss-Prot
Match: YEAD_ECOLI (Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli (strain K12) GN=yeaD PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.628e-11
Identity = 46/122 (37.70%), Postives = 62/122 (50.82%), Query Frame = 1
Query:  229 DGLPRIILTEPTGSSAEVLLYGGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFPQFGNLGL--LEQHGFARNRFWSL---DEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFEL 579
            D L  I++  P    A   L G  ++SWK    EE+L++S+ + +K   AIRGG+PVC+P FG      L  HGFARN  W+L    EDA  +        +   L  +EE  K WP  F L
Sbjct:   24 DELDLIVVDHPQ-VKASFALQGAHLLSWKPAGEEEVLWLSNNTPFKNGVAIRGGVPVCWPWFGPAAQQGLPAHGFARNLPWTLKSHHEDADGV-------ALTFELTQSEETKKFWPHDFTL 137          
BLAST of FC868804 vs. ExPASy Swiss-Prot
Match: YMY9_YEAST (Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae GN=YMR099C PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 49/145 (33.79%), Postives = 66/145 (45.52%), Query Frame = 1
Query:  244 IILTEPTG--SSAEVLLYGGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFPQFG------NLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILK---STEEDIKAWPRGFELRLRISISPGQLTLIPRVRNVDN 645
            ++LT P    +S  +L YG  V SWK  + EE L++S+ +     K +RGGIP+ FP FG      +L  L QHG ARN  W         PP     TV   LK   +  E  K WP  + L L + +    L     V N  +
Sbjct:   10 VVLTHPADETTSVHILKYGATVYSWKL-KSEEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSKLPQHGLARNSTWEFLGQTKENPP-----TVQFGLKPEIANPELTKLWPMDYLLILTVELGSDYLKTAIEVENTSS 148          
The following BLAST results are available for this feature:
BLAST of FC868804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AAPC_CENCI3.614e-4257.53Putative glucose-6-phosphate 1-epimerase OS=Cenchr... [more]
YEAD_ECOLI5.628e-1137.70Putative glucose-6-phosphate 1-epimerase OS=Escher... [more]
YMY9_YEAST9.601e-1133.79Glucose-6-phosphate 1-epimerase OS=Saccharomyces c... [more]
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Properties
Property NameValue
Genbank descriptionC31005A03EF AbioticL1 Citrus clementina cDNA clone C31005A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868804 ID=FC868804; Name=FC868804; organism=Citrus clementina; type=EST; length=648bp
ATCATATCATGGACTTCCAAGACCTTGAGAGAGAGTTGGTGGGTGGGTTG
TTCTTCAAACTCGAAGCCGATTAGGGGAATTAATAAAAATTATTGATATT
TATTATAGTAATATTATTATCAAGAGCCAAACCTGGAGTGGAGAAAAGGG
AAAGTGAACCCATTTGTGAGCAGAATAAGGGCAAGGTTAGGGCCAACAGC
TATGCCATTGAATATAGTTCATGATAAAGATGGATTGCCCAGAATTATTT
TGACTGAGCCAACTGGGTCATCTGCTGAGGTGCTTCTCTATGGTGGGCAA
GTTGTTTCCTGGAAGAATGAACGAAGAGAAGAACTGCTTTTTATGAGCAG
CAAGTCTTTCTGGAAGCCACCTAAAGCCATCAGGGGAGGTATACCTGTCT
GCTTCCCACAGTTTGGAAATCTTGGTTTACTGGAGCAACATGGATTCGCA
AGGAATAGATTTTGGTCATTGGATGAAGATGCTTCTCCTCTGCCCCCAGC
TAACAACCAGTCAACAGTGGATCTGATATTGAAGTCCACAGAAGAGGATA
TAAAGGCCTGGCCACGAGGCTTTGAGTTGCGTCTCCGTATTTCTATCAGT
CCTGGNCAGCTGACTTTGATCCCTCGTGTGAGGAATGTGGATAACAAG
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