FC868806

Overview
NameFC868806
Unique NameFC868806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9817 contig Ccv1_Contig9817:5..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868806 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.417e-15
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 3
Query:  516 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSK 635
            MALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK
Sbjct:    3 MALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSK 42          

HSP 2 Score: 26.9498 bits (58), Expect = 1.417e-15
Identity = 12/16 (75.00%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  632 KTSLDEILKPAXCTIV 679
            K  LDEIL PA CTIV
Sbjct:   42 KAQLDEILGPAECTIV 57          
BLAST of FC868806 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.251e-15
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 3
Query:  519 ALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSK 635
            ALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK
Sbjct:    4 ALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSK 42          

HSP 2 Score: 26.9498 bits (58), Expect = 5.251e-15
Identity = 12/16 (75.00%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  632 KTSLDEILKPAXCTIV 679
            K  LDEIL PA CTIV
Sbjct:   42 KAQLDEILGPAECTIV 57          
BLAST of FC868806 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.283e-14
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 3
Query:  513 KMALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSK 635
            +M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSLSK
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSK 42          

HSP 2 Score: 26.9498 bits (58), Expect = 3.283e-14
Identity = 12/16 (75.00%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  632 KTSLDEILKPAXCTIV 679
            K  LDEIL PA CTIV
Sbjct:   42 KAQLDEILGPAECTIV 57          
BLAST of FC868806 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.540e-14
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 3
Query:  516 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSK 635
            MAL  SAIGFEGYEKRLE+SFFE G+F+DP GRGLR+LSK
Sbjct:    1 MALSTSAIGFEGYEKRLEISFFEAGIFSDPEGRGLRALSK 40          

HSP 2 Score: 28.8758 bits (63), Expect = 5.540e-14
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  632 KTSLDEILKPAXCTIVS 682
            K  LD++LKPA CTIVS
Sbjct:   40 KEQLDKVLKPAECTIVS 56          
BLAST of FC868806 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.197e-14
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 3
Query:  513 KMALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSK 635
            +M LPVSAIGFEG+EKRLE+SF EPG+F+DP G+GLRSLSK
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFSDPNGKGLRSLSK 42          

HSP 2 Score: 26.9498 bits (58), Expect = 7.197e-14
Identity = 12/16 (75.00%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  632 KTSLDEILKPAXCTIV 679
            K  LDEIL PA CTIV
Sbjct:   42 KAQLDEILGPAECTIV 57          
BLAST of FC868806 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.354e-14
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 3
Query:  516 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSK 635
            M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSL+K
Sbjct:    1 MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLTK 40          

HSP 2 Score: 26.9498 bits (58), Expect = 9.354e-14
Identity = 12/16 (75.00%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  632 KTSLDEILKPAXCTIV 679
            K  LDEIL PA CTIV
Sbjct:   40 KAQLDEILGPAECTIV 55          
BLAST of FC868806 vs. ExPASy Swiss-Prot
Match: DCAM_IPOBA (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.049e-13
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 3
Query:  516 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSK 635
            MAL  SAIGFEGYE RLE+SFFE G+F+DP GRGLR+LSK
Sbjct:    1 MALSTSAIGFEGYENRLEISFFEAGIFSDPEGRGLRALSK 40          

HSP 2 Score: 28.8758 bits (63), Expect = 2.049e-13
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  632 KTSLDEILKPAXCTIVS 682
            K  LD++LKPA CTIVS
Sbjct:   40 KEQLDKVLKPAECTIVS 56          
BLAST of FC868806 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.459e-13
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 3
Query:  516 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSK 635
            MALP SAIGFEGYEKRLE+SFFE   FADP G+GLR+L+K
Sbjct:    1 MALPASAIGFEGYEKRLEISFFESSFFADPDGKGLRALNK 40          

HSP 2 Score: 27.7202 bits (60), Expect = 3.459e-13
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  632 KTSLDEILKPAXCTIV 679
            K+ +DEIL+PA CTIV
Sbjct:   40 KSQIDEILEPAECTIV 55          
BLAST of FC868806 vs. ExPASy Swiss-Prot
Match: DCAM2_DIACA (S-adenosylmethionine decarboxylase proenzyme 2 OS=Dianthus caryophyllus GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.485e-13
Identity = 29/40 (72.50%), Postives = 36/40 (90.00%), Query Frame = 3
Query:  522 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHH 641
            + +SAIGFEG+EKRLE+SFFEPG+F DP G+GLR+LSK H
Sbjct:   16 MTISAIGFEGFEKRLEISFFEPGIFVDPEGKGLRALSKAH 55          

HSP 2 Score: 26.5646 bits (57), Expect = 4.485e-13
Identity = 12/16 (75.00%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  632 KTSLDEILKPAXCTIV 679
            K  LDEIL PA CTIV
Sbjct:   53 KAHLDEILGPAECTIV 68          
BLAST of FC868806 vs. ExPASy Swiss-Prot
Match: DCAM1_DIACA (S-adenosylmethionine decarboxylase proenzyme 1 OS=Dianthus caryophyllus GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 2.794e-12
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 3
Query:  522 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSK 635
            + +SAIGFEG+EKRLE+SFFEPG+F DP G+GLR+LSK
Sbjct:   25 MALSAIGFEGFEKRLEISFFEPGIFVDPEGKGLRALSK 62          

HSP 2 Score: 26.9498 bits (58), Expect = 2.794e-12
Identity = 12/16 (75.00%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  632 KTSLDEILKPAXCTIV 679
            K  LDEIL PA CTIV
Sbjct:   62 KAQLDEILGPAECTIV 77          
The following BLAST results are available for this feature:
BLAST of FC868806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
DCAM_NICSY1.417e-1587.50S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_TOBAC5.251e-1587.18S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_SOLTU3.283e-1480.49S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_IPONI5.540e-1480.00S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_DATST7.197e-1478.05S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_SOLCI9.354e-1480.00S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_IPOBA2.049e-1377.50S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_CATRO3.459e-1377.50S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM2_DIACA4.485e-1372.50S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM1_DIACA2.794e-1273.68S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31005A05EF AbioticL1 Citrus clementina cDNA clone C31005A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868806 ID=FC868806; Name=FC868806; organism=Citrus clementina; type=EST; length=682bp
GCGATAACGAAACGGACGGAAGGCGATCGAAATTCGTTTTGTGAAACAGA
GTGAAAAATCAACCCTTCTTTAATCCTCAAGGAATTTTATTATTTTCTTG
GTCTCTGAATCGAGGGTTTTGCTTCTTGGTTTAGTGGGTTTGTTTTCGTT
ATATTATCTGAGCACGGCTGAATGATCTAATGGAGTCAAAAGGTGGTAAG
AAGAAGTCTAGCAGTAGTTCCTTATTCTACGAAGCTCCTCTTGGTTACAG
CATTGAAGACGTTCGACCTCACGGTGGCATAAAGAAGTTCAGATCAGCTG
CATACTCAAACTGCGTCCGCAAACCATCCTGAGATCGTCCAATTTGTCCC
ATACCCCCCCAAAAAAAAGCTCACTACTACTGCAATTTTAATTTTTTTAG
TTTTAGCCGTCTTAATACTGCAATTTACTTGGCCTATTTCTTTTTCGACT
TCCCTCGTTCTCTCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCATTTGT
TTTCTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGAAGG
TTATGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTG
ATCCTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACATCATTGGATGAAA
TACTGAAACCTGCGNAATGCACAATTGTTTCT
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