FC868825

Overview
NameFC868825
Unique NameFC868825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig331 contig Ccv1_Contig331:1..638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.834e-59
Identity = 111/192 (57.81%), Postives = 139/192 (72.40%), Query Frame = 2
Query:   65 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTDFCFVEEISKTNPYCTPTP-QYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRL 625
            +VA++VT  FF+GIKNQA + CEGK FYTR AF+SA+++YP F    T    KRE+AAFFAHVTHET  FC++ EI+K+N YC  +  Q+PCA G+ YYGRGP+Q++ N NY  AGR IGF+GL  P  VA+D VI+FKTALW+WM  VH  + QGFG TIR ING  EC G N AQ+  RV  Y  YC++L
Sbjct:   79 NVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQL 270          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.086e-59
Identity = 109/192 (56.77%), Postives = 134/192 (69.79%), Query Frame = 2
Query:   65 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFG----RTDTKREVAAFFAHVTHETTDFCFVEEISKTNPYCTPTP-QYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRL 625
            +VA +VT  FF+GIKNQA + CEGK FYTR AF+SA+  YP F     +   KRE+AAFFAH THET  FC++ EI+K+N YC PT  Q+PCA G+ YYGRGP+Q++ N NY  AGRAIGFDGL  P  VARD V++FK ALW+WM  VH  + QGFG T R +    ECGG N AQ+  RV  Y  YC++L
Sbjct:   68 NVASVVTSSFFNGIKNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNSVHGVVPQGFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQL 259          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 7.707e-58
Identity = 111/195 (56.92%), Postives = 138/195 (70.77%), Query Frame = 2
Query:   62 NSVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEIS-KTNPYCTPTP--QYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRL 625
            N  AD++T +F +GI +QA + C GK FYTRDAF+SAL+SY +FGR     D+KRE+AA FAH THET  FC++EEI   +  YC      QYPC++ K Y+GRGPIQL+ N NY  AG A  FDGL +PETV+ D V+SFKTALWYWM++V   +NQGFG TIR ING  EC G N   VQ RV  YT+YC++L
Sbjct:   66 NVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRPVINQGFGATIRAINGALECDGANPTTVQARVNYYTEYCRQL 260          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 7.213e-56
Identity = 108/196 (55.10%), Postives = 134/196 (68.37%), Query Frame = 2
Query:   65 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEIS-KTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR----YVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRL 625
            +V+D+VT EF+DGI +QA A C GK FYTR  F+ A+S+YP FG      D KRE+AA+FAHVTHET   C++EE     N YC  + QYPC   K Y+GRGP+QL+ N NYIDAG+ + FDGLN P+ V RD +ISFKT+LW+W+R    YV    NQGFG TIR ING  EC G N AQ+  RV  Y +YC +L
Sbjct:   45 TVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWIRKGVQYVILDPNQGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQL 240          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.607e-55
Identity = 106/192 (55.21%), Postives = 130/192 (67.71%), Query Frame = 2
Query:   65 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEISKTN-PYCTPT-PQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKR 622
            SV  +VT  FF+GIKNQAP  C GK FYTR +F++A  SY  F       D+KRE+AAFFAHVTHET   C++ EI+  N  YC  +  Q+PC  GK YYGRGP+Q++ N NY  AG+ IGFDGL  P+ VA+D  ISFKTALW+WM  VH  ++QGFG TIR ING  EC G+N   V  RV  Y DYC++
Sbjct:   83 SVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMNNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQ 274          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 7.975e-55
Identity = 106/192 (55.21%), Postives = 129/192 (67.19%), Query Frame = 2
Query:   65 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEISKTN-PYCTPT-PQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKR 622
            SV  +VT  FF+GIKNQAP  C GK FYTR +F++A  SY  F R     D+KRE+AAFFAHVTHET   C++ EI+  +  YC     Q+PC  GK YYGRGP+Q++ N NY  AG+ IGFDGL  P+ VA+D  ISFKTALW+WM  VH  + QGFG TIR ING  EC G+N   V  RV  Y DYC++
Sbjct:   86 SVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQ 277          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.360e-54
Identity = 107/193 (55.44%), Postives = 132/193 (68.39%), Query Frame = 2
Query:   62 NSVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEISKT--NPYCTP--TPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYC 616
            +SV+D+V+  FFDGI  QA A+C GK FYTR AF+SA+   P+FG      D KRE+AAFFAH++HETT+ C +EE      + YC      QYPCA GK YYGRGP+QL+ N NY  AG+AIGFDGL +PE VA D   SFK A+W+WM  VHS +NQGFG T + ING  EC GQN+ Q  DR++ Y  YC
Sbjct:   85 SSVSDIVSQAFFDGIIGQAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTNVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYC 275          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.360e-54
Identity = 106/194 (54.64%), Postives = 130/194 (67.01%), Query Frame = 2
Query:   65 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEIS-KTNPYCTPTP-QYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSAL--NQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKR 622
            SVA +VTPEFF  +  QA   C  KGFYTRDAF++A   YP FGRT    D+KRE+AAFFAH  HET  FC++EEI   +  YC  T  Q+PC  GK YYGRGP+Q++ N NY  AG++IGFDGL  P+ VAR  V++F+TALWYW   VH A    QGFG TIR ING  EC G+N   V +RV  Y  +C++
Sbjct:   67 SVASIVTPEFFAALVAQADDGCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETIKFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTNNVHDAFVSGQGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQ 260          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.721e-49
Identity = 96/189 (50.79%), Postives = 124/189 (65.61%), Query Frame = 2
Query:   65 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDTKREVAAFFAHVTHETTDFCFVEEIS-KTNPYCTPTP-QYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRL 625
            SV  +VT  FF+GI NQA   C GK FYTRD+FI+A +++P F  + T+RE+A  FAH THET  FC++EEI+  +  YC     QYPCA GK Y+GRGPIQL+ N NY   G+++  + L  PE V+ +  ++F+T LW+WM  V   LNQGFG TIR ING  EC G N   V  R+R Y DYC +L
Sbjct:   71 SVGSIVTQAFFNGIINQAGGGCAGKNFYTRDSFINAANTFPNFANSVTRREIATMFAHFTHETGHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRPVLNQGFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQL 258          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 4.248e-40
Identity = 98/228 (42.98%), Postives = 127/228 (55.70%), Query Frame = 2
Query:   62 NSVADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT---DT-KREVAAFFAHVTHETTD-------------FCFVEEISKTNP-YCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRL 625
            + VA +++P  FD  + ++    C  KGFYT DAF++A ++YP+F  T   DT KREVAAF A  +HETT              +CF EE +   P YC P P++PCA GK YYGRGPIQ+T N NY  AG+AIG D LN+P+ VA D  +SFKTA W+WM               ++  SA +Q      G+GE    ING  ECG     +V DR+  Y  YC  L
Sbjct:   74 SGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDML 301          
The following BLAST results are available for this feature:
BLAST of FC868825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_MAIZE1.834e-5957.81Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIB_MAIZE4.086e-5956.77Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU7.707e-5856.92Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIT_DIOJA7.213e-5655.10Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_ORYSJ1.607e-5555.21Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_ORYSJ7.975e-5555.21Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU1.360e-5455.44Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI6_ORYSJ1.360e-5454.64Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA1.721e-4950.79Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI3_ORYSJ4.248e-4042.98Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31005C03EF AbioticL1 Citrus clementina cDNA clone C31005C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868825 ID=FC868825; Name=FC868825; organism=Citrus clementina; type=EST; length=638bp
TCTTTTCCTGGGGTTACTTCTACTTGCCTTAGCCAACATTCCCAGAAATG
TAGTGTGTCAAAACTCCGTAGCCGATCTTGTGACTCCGGAATTTTTTGAC
GGCATTAAGAATCAGGCTCCAGCAACTTGTGAAGGGAAGGGGTTCTATAC
AAGAGATGCATTTATTAGTGCTCTCAGTTCATATCCTGAATTCGGTAGAA
CTGATACTAAGCGTGAAGTTGCCGCATTTTTTGCCCATGTCACTCATGAA
ACAACAGATTTTTGCTTCGTAGAAGAGATTAGTAAGACAAATCCTTATTG
TACACCGACTCCTCAATATCCATGTGCCAATGGTAAATTCTACTATGGCC
GGGGACCGATTCAGCTCACCGGAAACGGAAACTACATAGATGCCGGAAGG
GCCATCGGTTTCGACGGTCTGAACTCTCCGGAAACGGTGGCCAGGGACCG
TGTCATATCTTTCAAGACTGCTTTGTGGTATTGGATGAGATACGTGCACT
CAGCACTAAACCAAGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCT
GCTGAATGCGGCGGCCAAAACCGTGCACAAGTTCAGGATCGCGTTAGGCG
TTACACTGATTATTGCAAAAGATTGGTGTTGATCCTGG
back to top