FC868826
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868826 vs. ExPASy Swiss-Prot
Match: SWI3B_ARATH (SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 3.847e-59 Identity = 112/189 (59.26%), Postives = 138/189 (73.02%), Query Frame = 1 Query: 142 DVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINY--FASVKTLKW--XXXXXXXXXXXXXXXXXXXXXXXRLCNGCKTLCTIACFACDKYDLTLCARCYVXWYHRVGVSSSDFRRVEISEEARSDWTEKETL 696 D ++VPSYS WFS+ I++CEV+ LPEFFDSRS SKNP+ Y Y R+SI+K YR++ RKI+FTDVRRTLV DV SIRRVFDFL++WGLINY AS K LKW R CNGCK +C+IACFACDKYDLTLCARCYV +RVG++SS+F+RVEISEE++ +W++KE L Sbjct: 46 DNIHVPSYSSWFSWTDINDCEVRSLPEFFDSRSSSKNPKFYLYLRNSIIKQYRDDHPRKISFTDVRRTLVSDVVSIRRVFDFLDSWGLINYNSSASAKPLKWEEKEAGKSAGDAASEPATTVKETAKRNCNGCKAICSIACFACDKYDLTLCARCYVRSNYRVGINSSEFKRVEISEESKPEWSDKEIL 234
BLAST of FC868826 vs. ExPASy Swiss-Prot
Match: SWI3A_ARATH (SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.843e-20 Identity = 44/96 (45.83%), Postives = 66/96 (68.75%), Query Frame = 1 Query: 142 DVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVK 429 ++ +P+ S WF +D I E E + EFF S ++ P+VY+ YRD I+ +RE+ R++TFT VR+ LVGDV +++VF FLE WGLIN+ +S+K Sbjct: 11 ELYTIPAQSSWFLWDDIHEIERREFAEFFTESSITRTPKVYKEYRDFIINKFREDTCRRLTFTSVRKFLVGDVNLLQKVFLFLEKWGLINFSSSLK 106
BLAST of FC868826 vs. ExPASy Swiss-Prot
Match: SSR1_SCHPO (SWI/SNF and RSC complexes subunit ssr1 OS=Schizosaccharomyces pombe GN=ssr1 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19 Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 1 Query: 148 VNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINY 414 V VP +++WF F + E E K PEFFD ++ SK P VY+ YRD ++ +R N +TFT RR L GDV ++ RV FLE WGLINY Sbjct: 52 VEVPEWAQWFDFSKVHEIEKKQNPEFFDGKNTSKTPEVYKEYRDFMISTFRLNSKVYLTFTACRRNLAGDVCAVLRVHRFLEQWGLINY 140
BLAST of FC868826 vs. ExPASy Swiss-Prot
Match: SWI3_YEAST (SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae GN=SWI3 PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.639e-19 Identity = 44/94 (46.81%), Postives = 58/94 (61.70%), Query Frame = 1 Query: 154 VPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKTL 435 +PSYS+WF+ + I EV+ LPEFF +R PSK P VY YR+ +V YR NP+ + T RR + GD ++ R+ FL WGLINY K L Sbjct: 307 IPSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGLINYQVDSKLL 400
BLAST of FC868826 vs. ExPASy Swiss-Prot
Match: SSR2_SCHPO (SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe GN=ssr2 PE=1 SV=3) HSP 1 Score: 93.2041 bits (230), Expect = 1.479e-18 Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1 Query: 154 VPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINY 414 VPSY+ WF I + E + PEFF+ +SP K P +Y+ YRD ++ YR P+ +T T RR LVGDV +I RV FLE WGLINY Sbjct: 20 VPSYAGWFDMSKIHDIERRSNPEFFNGKSPLKTPSIYKDYRDFMINSYRLEPNEYLTVTACRRNLVGDVCAIIRVHAFLEQWGLINY 106
BLAST of FC868826 vs. ExPASy Swiss-Prot
Match: SMRC2_MOUSE (SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.932e-18 Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1 Query: 154 VPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINY 414 +PSY+ WF ++S+ E + LPEFF+ ++ SK P +Y YR+ ++ YR NP +T T RR L GDV +I RV FLE WGLINY Sbjct: 426 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 512
BLAST of FC868826 vs. ExPASy Swiss-Prot
Match: SMRC2_HUMAN (SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.932e-18 Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1 Query: 154 VPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINY 414 +PSY+ WF ++S+ E + LPEFF+ ++ SK P +Y YR+ ++ YR NP +T T RR L GDV +I RV FLE WGLINY Sbjct: 426 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 512
BLAST of FC868826 vs. ExPASy Swiss-Prot
Match: SMRC1_MOUSE (SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17 Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 1 Query: 154 VPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINY 414 +PSY+ WF ++ I E + LPEFF+ ++ SK P +Y YR+ ++ YR NP +T T RR L GDV ++ RV FLE WGL+NY Sbjct: 450 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNY 536
BLAST of FC868826 vs. ExPASy Swiss-Prot
Match: SMRC1_HUMAN (SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3) HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17 Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 1 Query: 154 VPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINY 414 +PSY+ WF ++ I E + LPEFF+ ++ SK P +Y YR+ ++ YR NP +T T RR L GDV ++ RV FLE WGL+NY Sbjct: 451 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNY 537
BLAST of FC868826 vs. ExPASy Swiss-Prot
Match: RSC8_YEAST (Chromatin structure-remodeling complex protein RSC8 OS=Saccharomyces cerevisiae GN=RSC8 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14 Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 1 Query: 148 VNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKT 432 V +PS++ WF I E E + P+FF+ S K P+ Y+ R+ I+ YR +P +T T VRR + DV SI ++ FLE WGLINY +T Sbjct: 80 VIIPSFASWFDISKIHEIEKRSNPDFFNDSSRFKTPKAYKDTRNFIINTYRLSPYEYLTITAVRRNVAMDVASIVKIHAFLEKWGLINYQIDPRT 174 The following BLAST results are available for this feature:
BLAST of FC868826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868826 ID=FC868826; Name=FC868826; organism=Citrus clementina; type=EST; length=715bpback to top |