FC868829

Overview
NameFC868829
Unique NameFC868829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14506 contig Ccv1_Contig14506:306..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: DEGP1_ARATH (Protease Do-like 1, chloroplastic OS=Arabidopsis thaliana GN=DEGP1 PE=1 SV=2)

HSP 1 Score: 344.739 bits (883), Expect = 2.421e-94
Identity = 177/213 (83.10%), Postives = 187/213 (87.79%), Query Frame = 3
Query:    3 SASAFVVSPQRKLQTDELATVRLFQENTPSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSI 641
            SASAFVVS  +KLQTDELATVRLFQENTPSVV ITNLA RQDAFTLDVLEVPQGSGSGFVWD +GH+VTNYHVIRGASD+RVT ADQ+ +DAK+VGFDQDKDVAVLRIDAPK+KLRPIP+GVSADLLVGQKV+AIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAIN                   TAIYSPSGASSGVGFSI
Sbjct:  102 SASAFVVSTPKKLQTDELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWDKQGHIVTNYHVIRGASDLRVTLADQTTFDAKVVGFDQDKDVAVLRIDAPKNKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSI 314          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: DEGP8_ARATH (Protease Do-like 8, chloroplastic OS=Arabidopsis thaliana GN=DEGP8 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.056e-41
Identity = 99/220 (45.00%), Postives = 131/220 (59.55%), Query Frame = 3
Query:   21 VSPQRKLQTDELATVRLFQENTPSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASD-----------IRVTFAD--QSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSI 641
            V P   L   E   V+LF++NT SVVNI ++  R       V+E+P+G+GSG VWD +G++VTNYHVI  A             + +  +D  Q  ++ K+VG D+ KD+AVL++DAP+  L+PI +G S  L VGQ+  AIGNPFG DHTLT GVISGL R+I S  TG  I   IQTDAAIN                   TAI++ +G S+GVGF+I
Sbjct:  106 VFPAGPLFPTEGRIVQLFEKNTYSVVNIFDVTLRPQLKMTGVVEIPEGNGSGVVWDGQGYIVTNYHVIGNALSRNPSPGDVVGRVNILASDGVQKNFEGKLVGADRAKDLAVLKVDAPETLLKPIKVGQSNSLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFS-QTGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIFTQTGTSAGVGFAI 324          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: DEGP5_ARATH (Protease Do-like 5, chloroplastic OS=Arabidopsis thaliana GN=DEGP5 PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.397e-33
Identity = 90/223 (40.36%), Postives = 123/223 (55.16%), Query Frame = 3
Query:   30 QRKLQTDELATVRLFQENTPSVVNITNL----AARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIR-------GASDIRVTFADQS----AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYS--PSGASSGVGFSIQL 647
            + +L+ +E   V LFQ+ +PSVV I  +     +  D  T +     +G+GSGFVWD  GH+VTNYHVI        G    +V+  D      + + KIVG D D D+AVL+I+    +L P+ +G S DL VGQ  +AIGNP+G ++TLT GV+SGL REI S   G+ I + IQTDA IN                   TA ++   SG SSGV F+I +
Sbjct:   81 EEELEEEEERNVNLFQKTSPSVVYIEAIELPKTSSGDILTDEENGKIEGTGSGFVWDKLGHIVTNYHVIAKLATDQFGLQRCKVSLVDAKGTRFSKEGKIVGLDPDNDLAVLKIETEGRELNPVVLGTSNDLRVGQSCFAIGNPYGYENTLTIGVVSGLGREIPS-PNGKSISEAIQTDADINSGNSGGPLLDSYGHTIGVNTATFTRKGSGMSSGVNFAIPI 302          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: DEGP_BRUSU (Probable serine protease do-like OS=Brucella suis GN=degP PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25
Identity = 66/164 (40.24%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  150 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSI 641
            E P   GSGFV    G+VVTN HV+       V   D +  DAK++G D   D+AVL+I+APK K   +  G    + VG  V A+GNPFGL  T+T+G++S   R+I +     P  D IQ DAA+N                   TAI+SPSG S G+ F+I
Sbjct:  130 ERPVAQGSGFVISEDGYVVTNNHVVSDGDAYTVVLDDGTELDAKLIGADPRTDLAVLKINAPKRKFVYVAFGDDNKVRVGDWVVAVGNPFGLGGTVTSGIVSARGRDIGAG----PYDDFIQIDAAVNKGNSGGPAFDLSGEVIGINTAIFSPSGGSVGIAFAI 289          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: DEGP_BRUME (Probable serine protease do-like OS=Brucella melitensis GN=degP PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25
Identity = 66/164 (40.24%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  150 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSI 641
            E P   GSGFV    G+VVTN HV+       V   D +  DAK++G D   D+AVL+I+APK K   +  G    + VG  V A+GNPFGL  T+T+G++S   R+I +     P  D IQ DAA+N                   TAI+SPSG S G+ F+I
Sbjct:  130 ERPVAQGSGFVISEDGYVVTNNHVVSDGDAYTVVLDDGTELDAKLIGADPRTDLAVLKINAPKRKFVYVAFGDDNKVRVGDWVVAVGNPFGLGGTVTSGIVSARGRDIGAG----PYDDFIQIDAAVNKGNSGGPAFDLSGEVIGINTAIFSPSGGSVGIAFAI 289          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: DEGP_BRUAB (Probable serine protease do-like OS=Brucella abortus GN=degP PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25
Identity = 66/164 (40.24%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  150 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSI 641
            E P   GSGFV    G+VVTN HV+       V   D +  DAK++G D   D+AVL+I+APK K   +  G    + VG  V A+GNPFGL  T+T+G++S   R+I +     P  D IQ DAA+N                   TAI+SPSG S G+ F+I
Sbjct:  130 ERPVAQGSGFVISEDGYVVTNNHVVSDGDAYTVVLDDGTELDAKLIGADPRTDLAVLKINAPKRKFVYVAFGDDNKVRVGDWVVAVGNPFGLGGTVTSGIVSARGRDIGAG----PYDDFIQIDAAVNKGNSGGPAFDLSGEVIGINTAIFSPSGGSVGIAFAI 289          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: DEGP_BRUA2 (Probable serine protease do-like OS=Brucella abortus (strain 2308) GN=degP PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25
Identity = 66/164 (40.24%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  150 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSI 641
            E P   GSGFV    G+VVTN HV+       V   D +  DAK++G D   D+AVL+I+APK K   +  G    + VG  V A+GNPFGL  T+T+G++S   R+I +     P  D IQ DAA+N                   TAI+SPSG S G+ F+I
Sbjct:  130 ERPVAQGSGFVISEDGYVVTNNHVVSDGDAYTVVLDDGTELDAKLIGADPRTDLAVLKINAPKRKFVYVAFGDDNKVRVGDWVVAVGNPFGLGGTVTSGIVSARGRDIGAG----PYDDFIQIDAAVNKGNSGGPAFDLSGEVIGINTAIFSPSGGSVGIAFAI 289          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: DEGP_SALTY (Protease do OS=Salmonella typhimurium GN=degP PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.497e-23
Identity = 66/159 (41.51%), Postives = 90/159 (56.60%), Query Frame = 3
Query:  168 GSGFVWDS-KGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSI 641
            GSG + D+ KG+VVTN HV+  AS I+V  +D   +DAK+VG D   D+A+++I  PK+ L  I +  S  L VG    AIGNPFGL  T+T+G++S L R   S       ++ IQTDAAIN                   TAI +P G + G+GF+I
Sbjct:  115 GSGVIIDAAKGYVVTNNHVVDNASVIKVQLSDGRKFDAKVVGKDPRSDIALIQIQNPKN-LTAIKLADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR---SGLNVENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAI 269          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: Y938_SYNP6 (Uncharacterized serine protease syc0938_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc0938_d PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.110e-22
Identity = 62/164 (37.80%), Postives = 86/164 (52.44%), Query Frame = 3
Query:  150 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSI 641
            EV +G GSGFV D  G ++TN HV+  A  +RVT  D   +  ++ G D   D+A++ +D   ++L    IG S+++ VG    AIGNP GLD+T+T G++S L R  S+        D IQTDA IN                   TAI    GA  G+GF+I
Sbjct:  119 EVQRGQGSGFVVDGNGLIMTNAHVVANADQVRVTLRDGREFTGRVRGADSVTDLALVEVDTKGERLPTARIGNSSNVEVGDWAIAIGNPLGLDNTVTLGIVSSLGRRSSAVGIPDKRLDFIQTDAVINPGNSGGPLVNSRGEVIGINTAIRQAPGA--GIGFAI 280          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: DEGP_RICCN (Probable serine protease do-like OS=Rickettsia conorii GN=degP PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.110e-22
Identity = 65/159 (40.88%), Postives = 89/159 (55.97%), Query Frame = 3
Query:  168 GSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFG-LDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSI 641
            GSGF+ +  G +VTNYHVI     I +  AD +   AK++G D   D+A+L+ID+ ++ L  +  G S D  VG  V AIGNPFG L  T+T+G+IS   R+I    T   + + IQTDAAIN                   TAI+SP G + G+GF+I
Sbjct:  118 GSGFIIEPNGLIVTNYHVIANVDKINIKLADNTELSAKLIGNDTKTDLALLKIDS-EEPLPFVEFGDSNDARVGDWVIAIGNPFGNLGGTVTSGIISSKGRDI-DIDTDNIVDNFIQTDAAINNGNSGGPMFNLDQKVIGVNTAIFSPLGTNIGIGFAI 274          
The following BLAST results are available for this feature:
BLAST of FC868829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
DEGP1_ARATH2.421e-9483.10Protease Do-like 1, chloroplastic OS=Arabidopsis t... [more]
DEGP8_ARATH4.056e-4145.00Protease Do-like 8, chloroplastic OS=Arabidopsis t... [more]
DEGP5_ARATH1.397e-3340.36Protease Do-like 5, chloroplastic OS=Arabidopsis t... [more]
DEGP_BRUSU4.075e-2540.24Probable serine protease do-like OS=Brucella suis ... [more]
DEGP_BRUME4.075e-2540.24Probable serine protease do-like OS=Brucella melit... [more]
DEGP_BRUAB4.075e-2540.24Probable serine protease do-like OS=Brucella abort... [more]
DEGP_BRUA24.075e-2540.24Probable serine protease do-like OS=Brucella abort... [more]
DEGP_SALTY8.497e-2341.51Protease do OS=Salmonella typhimurium GN=degP PE=2... [more]
Y938_SYNP61.110e-2237.80Uncharacterized serine protease syc0938_d OS=Synec... [more]
DEGP_RICCN1.110e-2240.88Probable serine protease do-like OS=Rickettsia con... [more]

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Properties
Property NameValue
Genbank descriptionC31005C10EF AbioticL1 Citrus clementina cDNA clone C31005C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868829 ID=FC868829; Name=FC868829; organism=Citrus clementina; type=EST; length=661bp
ATTCCGCGTCGGCTTTCGTCGTCTCTCCGCAACGTAAGCTTCAAACCGAC
GAACTCGCTACCGTTCGTCTCTTTCAAGAGAACACTCCTTCTGTTGTTAA
TATCACCAATCTTGCTGCCAGGCAGGATGCATTTACACTGGATGTGTTGG
AGGTCCCACAAGGATCCGGTTCGGGTTTTGTCTGGGATTCCAAAGGTCAC
GTTGTCACCAATTATCATGTGATTCGTGGTGCTTCTGATATCAGGGTCAC
TTTTGCTGATCAATCAGCTTATGATGCGAAAATTGTTGGATTTGACCAAG
ACAAGGATGTTGCTGTGTTGCGTATTGATGCACCGAAAGATAAATTAAGA
CCTATTCCTATTGGTGTCTCTGCAGACTTGCTTGTTGGTCAGAAAGTATA
TGCTATTGGCAACCCCTTTGGACTCGACCATACCCTTACAACTGGCGTGA
TCAGTGGGCTTCGTAGGGAAATCAGTTCTGCAGCCACTGGCCGTCCAATT
CAGGATGTTATACAAACTGATGCGGCCATTAATCCTGGTAATAGTGGAGG
ACCACTTTTAGATAGTTCAGGAAGCCTAATTGGAATAAATACAGCTATAT
ACTCTCCATCTGGTGCATCCTCTGGTGTTGGATTTTCGATTCAGTTGACA
CTGTAAATGGC
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