FC868835

Overview
NameFC868835
Unique NameFC868835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15453 contig Ccv1_Contig15453:46..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.299e-45
Identity = 105/168 (62.50%), Postives = 121/168 (72.02%), Query Frame = 1
Query:  187 MQGVVLNPT-YSR-PHQTLDSPSCSRPASKSTKSFFGERVS--LTRWRNPVRHSSCRLLLIRKRGAARRNVIKAVATPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELN 678
            MQ + LNP   SR P Q +D  S S       +    +R    + R  NP+R    R L  R+    R  V+KAVATPD  +E+PLT EN+ESVLDEIRPYL+SDGGNVALHEIDGN+VR+KLQGACGSCPSS MTMKMGIERRLMEKIPEIVAVE++ DEETGLELN
Sbjct:    1 MQLLTLNPAAISRTPPQAIDPSSSSSLLLPFPQILSSQRALGLVARPCNPLRRGLSRFLSSRQL-FRRSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELN 167          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.546e-35
Identity = 85/156 (54.49%), Postives = 107/156 (68.59%), Query Frame = 1
Query:  229 QTLDSPSCSRPA---SKSTKSFFGERVSLTRWRNPVRHSSCRLLLIRKRGAARRN-VIKAVA--TPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELN 678
            QT   P  +  A   S +T S    +V+   W +    SS    L+      R   V+ A+A   P +A++LPLTA N+ESVLD++RPYL +DGG+VALHEI GNVVRLKLQGACGSCPSS++T+K GIERRLMEKIP++ AVE V D+ETGLELN
Sbjct:    2 QTTTVPMAAAAAVAPSTTTSSSASFKVAAYAWSSCRSSSSPATRLVAAPNHQRPPLVVGAIAGLDPVTAVQLPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEKIPDVAAVEPVTDKETGLELN 157          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.461e-28
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 1
Query:  424 LPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEET-GLELN 678
            +PLT EN+E VLDE+RP L++DGGNVALHEIDG VV LKLQGACGSCPSS MT+KMGIE RL +KIPEI++VE   + ET GLELN
Sbjct:   82 MPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRDKIPEIMSVEQFLESETGGLELN 167          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: YUTI_BACSU (Putative nitrogen fixation protein yutI OS=Bacillus subtilis GN=yutI PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  439 ENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 648
            E ++ VLD++RP+L+ DGG+  L ++D  +V+L+L GACGSCPSS +T+K GIER L+E++P +V VE V
Sbjct:   41 EQVQEVLDKLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGIERALLEEVPGVVEVEQV 110          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  412 SAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVA-VESVADEE 660
            SA    LT +N++ VL+++RP+LISDGGNV +  ++  VV LKLQGAC SCPSS  TM MGIER L EK  + +  +  V DEE
Sbjct:   79 SAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDEE 162          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NIFU_ANASL (Nitrogen fixation protein nifU (Fragment) OS=Anabaena sp. (strain L31) GN=nifU PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 38/69 (55.07%), Postives = 55/69 (79.71%), Query Frame = 1
Query:  445 IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 648
            I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSCPSS  T+K+ IE RL ++I   + VE+V
Sbjct:   44 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRINPSLVVEAV 112          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NIFU_ANASP (Nitrogen fixation protein nifU OS=Anabaena sp. (strain PCC 7120) GN=nifU PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 1
Query:  391 KAVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 648
            K    P+S  + PLT       I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSC SS  T+K+ IE RL ++I   + VE+V
Sbjct:  210 KPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSLVVEAV 300          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NIFU_ANAAZ (Nitrogen fixation protein nifU OS=Anabaena azollae GN=nifU PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 1
Query:  391 KAVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 648
            K    P+S  + PLT       I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSC SS  T+K+ IE RL ++I   + VE+V
Sbjct:  210 KPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSLVVEAV 300          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NFU1_DROWI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila willistoni GN=GK25604 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  433 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE 657
            T   I+ +LD  IRP +  DGG++     D  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE
Sbjct:  179 TVMMIKELLDTRIRPTVQEDGGDIVFMSYDNGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDE 254          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NFU1_DROME (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila melanogaster GN=CG32500 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 1
Query:  433 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE 657
            T   I+ +LD  IRP +  DGG++     +G VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDE 253          
The following BLAST results are available for this feature:
BLAST of FC868835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
NIFU2_ARATH1.299e-4562.50NifU-like protein 2, chloroplastic OS=Arabidopsis ... [more]
NIFU1_ORYSJ3.546e-3554.49NifU-like protein 1, chloroplastic OS=Oryza sativa... [more]
NIFU3_ARATH2.461e-2873.26NifU-like protein 3, chloroplastic OS=Arabidopsis ... [more]
YUTI_BACSU9.700e-1752.86Putative nitrogen fixation protein yutI OS=Bacillu... [more]
NIFU1_ARATH2.161e-1653.57NifU-like protein 1, chloroplastic OS=Arabidopsis ... [more]
NIFU_ANASL6.952e-1555.07Nitrogen fixation protein nifU (Fragment) OS=Anaba... [more]
NIFU_ANASP1.186e-1447.25Nitrogen fixation protein nifU OS=Anabaena sp. (st... [more]
NIFU_ANAAZ1.186e-1447.25Nitrogen fixation protein nifU OS=Anabaena azollae... [more]
NFU1_DROWI3.229e-1246.05NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROME3.229e-1246.05NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionC31005D06EF AbioticL1 Citrus clementina cDNA clone C31005D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868835 ID=FC868835; Name=FC868835; organism=Citrus clementina; type=EST; length=679bp
GGCGCAAAAAAAAAAAAAAAAGACAACAAAGACTGCGCCAACCGCCCGCG
ACCCCGCGTAACGAAAGCAAAATAAAACAGAAACACAGATCGATTCAATT
AATCGTTAAACCATCAATTTTTATCAAATCGAATCCCCTGAAAGGAAAAA
AAAAAAGTATACACCCGAAGAAATACAAAGAGAAAGATGCAAGGCGTTGT
GTTGAACCCAACTTACAGTCGCCCTCACCAAACCCTAGACTCTCCTTCTT
GTTCTCGTCCTGCCTCTAAGAGTACTAAAAGTTTCTTTGGAGAACGAGTT
TCGCTTACGAGGTGGCGGAATCCGGTGCGTCACAGCTCGTGTCGGTTACT
GCTGATTCGGAAGCGTGGGGCCGCGCGAAGGAACGTCATAAAGGCTGTGG
CTACTCCTGATTCAGCTATTGAGTTACCTTTAACTGCTGAGAATATTGAA
AGTGTATTGGATGAAATTCGACCATATCTTATATCAGATGGGGGAAATGT
GGCATTACATGAGATTGATGGCAATGTTGTACGATTGAAGCTACAGGGAG
CATGTGGGTCTTGTCCCAGTTCTGTTATGACGATGAAGATGGGTATTGAG
CGTCGCTTAATGGAGAAGATCCCCGAGATAGTTGCAGTGGAATCGGTAGC
AGATGAAGAAACTGGGCTTGAGCTGAATG
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