FC868843

Overview
NameFC868843
Unique NameFC868843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12671 contig Ccv1_Contig12671:81..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868843 vs. ExPASy Swiss-Prot
Match: HGNAT_MOUSE (Heparan-alpha-glucosaminide N-acetyltransferase OS=Mus musculus GN=Hgsnat PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.140e-16
Identity = 50/142 (35.21%), Postives = 80/142 (56.34%), Query Frame = 1
Query:  118 SKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVK-----KIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPN 528
            + R+  +D FRGL +VLM+ V+  GG Y    HS WNG T+AD V P+F+FI+G +I L++  + +  G  K     KI++R+  L+  G+I+       P+     +    +R  G+LQR+ + Y VVA++E    K  P+
Sbjct:  258 ANRLRCVDTFRGLALVLMVFVNYGGGKYWYFKHSSWNGLTVADLVFPWFVFIMGTSIFLSMTSILQ-RGCSKFKLLGKIVWRSFLLICIGVIIVN-----PNYCLGPLSWDKVRIPGVLQRLGVTYFVVAVLEFFFWKPVPD 393          
BLAST of FC868843 vs. ExPASy Swiss-Prot
Match: HGNAT_HUMAN (Heparan-alpha-glucosaminide N-acetyltransferase OS=Homo sapiens GN=HGSNAT PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.496e-15
Identity = 49/139 (35.25%), Postives = 79/139 (56.83%), Query Frame = 1
Query:  124 RVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVK-----KIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRP 525
            R+ ++D FRG+ ++LM+ V+  GG Y    H+ WNG T+AD V P+F+FI+G +I L++  + +  G  K     KI +R+  L+  GII+       P+     +    +R  G+LQR+ + Y VVA++E L  K  P
Sbjct:  267 RLRSVDTFRGIALILMVFVNYGGGKYWYFKHASWNGLTVADLVFPWFVFIMGSSIFLSMTSILQ-RGCSKFRLLGKIAWRSFLLICIGIIIVN-----PNYCLGPLSWDKVRIPGVLQRLGVTYFVVAVLELLFAKPVP 399          
The following BLAST results are available for this feature:
BLAST of FC868843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HGNAT_MOUSE5.140e-1635.21Heparan-alpha-glucosaminide N-acetyltransferase OS... [more]
HGNAT_HUMAN1.496e-1535.25Heparan-alpha-glucosaminide N-acetyltransferase OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionC31005E04EF AbioticL1 Citrus clementina cDNA clone C31005E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868843 ID=FC868843; Name=FC868843; organism=Citrus clementina; type=EST; length=613bp
CAAGACGATGGTAAAGACAGTTAACCTGGCATAAACAAGGAGAAAGGGCT
GGAGAGGAGTGAAGTGCAGGATGAACAGAAAGGAGAGCTGCAGCTGCAAC
AGCTTCTGCAGCAGAAGAGTAAGAGAGTTGCAACCTTGGATGCATTTAGA
GGTCTTACTGTTGTGTTGATGATATTAGTAGACGATGCTGGGGGTGCATA
TGCACGCATTGATCACTCGCCATGGAATGGCTGCACGCTGGCTGACTTTG
TGATGCCATTCTTTCTCTTCATTGTTGGGGTTGCAATCGCACTCGCTCTC
AAGAAAGTTCCTAAGATCAATGGTGCAGTTAAGAAGATAATTTTTAGGAC
GCTGAAGCTTCTATTTTGGGGAATTATCTTGCAAGGAGGATACTCACACG
CCCCTGATGCTCTCTCATACGGAGTTGACATGAAGCACATTCGATGGTGT
GGCATTCTCCAGAGAATAGCATTAGTGTACGTAGTCGTTGCTCTAATTGA
GACCTTAACCACCAAGAGAAGACCTAATGTCCTGGAACCTCGGCACCTCT
CAATTTTCACTGCATATCAGTGGCAATGGATTGGAGGATTCATCGCATTT
GTCATATACATTA
back to top