FC868853

Overview
NameFC868853
Unique NameFC868853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9411 contig Ccv1_Contig9411:77..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.199e-22
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P   I++ KN+RVC D H+  + IS I  R I+VRDANRFHHF+ G CSC DYW
Sbjct:  739 PGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792          

HSP 2 Score: 54.299 bits (129), Expect = 1.199e-22
Identity = 25/57 (43.86%), Postives = 38/57 (66.67%), Query Frame = -3
Query:  268 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 438
            KE+Y+K+E +  +++ AG  P+   ALHDVE E+RELM+   SE L + FG++   P
Sbjct:  683 KEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEP 739          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.554e-22
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P   I+V KN+RVC D H+A ++I+ +Y R+I++RDANRFH F+ G CSC DYW
Sbjct:  937 PSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990          

HSP 2 Score: 49.6766 bits (117), Expect = 1.554e-22
Identity = 23/55 (41.82%), Postives = 35/55 (63.64%), Query Frame = -3
Query:  268 VYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 432
            +Y+KV+ M  +IK  G +P+    L DVE E++E  +YY SE L V FG+++  P
Sbjct:  883 IYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPP 937          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.833e-22
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            IQV KN+R+C D H A +FIS I +R+IIVRD  RFHHF+ G+CSC DYW
Sbjct:  612 IQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 661          

HSP 2 Score: 47.7506 bits (112), Expect = 5.833e-22
Identity = 21/53 (39.62%), Postives = 36/53 (67.92%), Query Frame = -3
Query:  274 VYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNL 432
            ++KK++ +  ++K+AG  P+L  ALH+VE E +E ++ + SE L V FG + L
Sbjct:  554 IHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKL 606          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 7.549e-22
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = -1
Query:  108 SPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 272
            SP  +I+V KN+RVCND H A +FIS I  R+II+RD  RFH F+ GTCSC DYW
Sbjct:  836 SPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890          

HSP 2 Score: 45.8246 bits (107), Expect = 7.549e-22
Identity = 19/51 (37.25%), Postives = 34/51 (66.67%), Query Frame = -3
Query:  268 VESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 420
            +E++   ++  G +PD SC LH+VE +++E+++   SE L + FGI+N  P
Sbjct:  787 LETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSP 837          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP419_ARATH (Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.779e-21
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = -1
Query:  108 AVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 263
            + + V KN+RVC D H+  + IS +  R+I++RD  RFHHF+ GTCSC DYW
Sbjct:  646 SAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697          

HSP 2 Score: 52.7582 bits (125), Expect = 4.779e-21
Identity = 23/54 (42.59%), Postives = 36/54 (66.67%), Query Frame = -3
Query:  271 VYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLI 432
            +Y+K+E +  ++K  G  PD   ALHDVE E +E M++Y SE L + FG++N +
Sbjct:  590 IYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTV 643          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.776e-20
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            +QV KN+R+C D H+  +FIS    R+I +RD NRFHHF+ G CSC D+W
Sbjct:  711 LQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760          

HSP 2 Score: 49.6766 bits (117), Expect = 1.776e-20
Identity = 22/53 (41.51%), Postives = 39/53 (73.58%), Query Frame = -3
Query:  277 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMN 435
            ++ +K++ +S E++ +G  P+L  ALHDVE +++E M++  SE L VVFG++N
Sbjct:  652 QITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLN 704          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP406_ARATH (Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.313e-20
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = -1
Query:  108 ILSPE-AVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 278
            I +PE + + VTKNVR+C+D HSA + IS I +R I++RD+NRFHHF  G CSC DYW
Sbjct:  653 IKTPEKSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNRFHHFLDGQCSCCDYW 710          

HSP 2 Score: 43.8986 bits (102), Expect = 2.313e-20
Identity = 21/51 (41.18%), Postives = 32/51 (62.75%), Query Frame = -3
Query:  280 VYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIM 432
            +Y KV+ +  +IK  G  PD++ A HDV+ E RE  + Y SE L V +G++
Sbjct:  603 IYAKVKEVMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLI 653          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP198_ARATH (Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.317e-20
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = -1
Query:  108 ILSPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 278
            IL   A I++ KN+RVC+D H AF++IS I  R+I +RD +RFHHF  G CSC DYW
Sbjct:  594 ILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650          

HSP 2 Score: 45.4394 bits (106), Expect = 2.317e-20
Identity = 20/55 (36.36%), Postives = 35/55 (63.64%), Query Frame = -3
Query:  274 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNL 438
            KE+Y  ++ +++E+K+ G  PD +  LHD++ E++E  +   SE L V F +M L
Sbjct:  541 KEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMIL 595          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP373_ARATH (Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.578e-20
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            I++ KN+RVC D HSAF++IS I  R+II+RD+NRFHHF+ G CSC+D+W
Sbjct:  946 IRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995          

HSP 2 Score: 40.4318 bits (93), Expect = 6.578e-20
Identity = 18/48 (37.50%), Postives = 33/48 (68.75%), Query Frame = -3
Query:  289 VYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVF 432
            +YKK++ ++ +++ AG +P    AL+D+E E++E ++ Y SE L V F
Sbjct:  887 IYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAF 934          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.606e-20
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = -1
Query:  108 EAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 266
            +  +++ KN+RVCND H+A +FIS +  R+IIVRD  RFHHF+ G CSC DYW
Sbjct:  734 KTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786          

HSP 2 Score: 42.743 bits (99), Expect = 6.606e-20
Identity = 19/53 (35.85%), Postives = 34/53 (64.15%), Query Frame = -3
Query:  277 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMN 435
            E+Y  ++ +  EIK  G +PD +  LHD+E E +E ++ + SE L + FG+++
Sbjct:  678 EIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLIS 730          
The following BLAST results are available for this feature:
BLAST of FC868853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
PP341_ARATH1.199e-2257.41Pentatricopeptide repeat-containing protein At4g30... [more]
PP347_ARATH1.554e-2255.56Pentatricopeptide repeat-containing protein At4g33... [more]
PP316_ARATH5.833e-2264.00Pentatricopeptide repeat-containing protein At4g16... [more]
PP285_ARATH7.549e-2261.82Pentatricopeptide repeat-containing protein At3g57... [more]
PP419_ARATH4.779e-2151.92Pentatricopeptide repeat-containing protein At5g46... [more]
PPR53_ARATH1.776e-2054.00Pentatricopeptide repeat-containing protein At1g20... [more]
PP406_ARATH2.313e-2058.62Pentatricopeptide repeat-containing protein At5g39... [more]
PP198_ARATH2.317e-2056.14Pentatricopeptide repeat-containing protein At2g41... [more]
PP373_ARATH6.578e-2062.00Putative pentatricopeptide repeat-containing prote... [more]
PP168_ARATH6.606e-2056.60Pentatricopeptide repeat-containing protein At2g22... [more]

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Properties
Property NameValue
Genbank descriptionC31005F06EF AbioticL1 Citrus clementina cDNA clone C31005F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868853 ID=FC868853; Name=FC868853; organism=Citrus clementina; type=EST; length=440bp
CTGTTCTCTATGGGAATGCCACAATTGGGCTAAAATGATTAGGATGAATT
CGTACAATGCTTGGCTTTGAGGTTCTAGTTATGTACGGGCTTACCTGGGA
TAGCTTACCAATAATCGTTGCATGAGCAAGTGCCACCTTCAAAATGATGG
AACCGATTTGCATCTCTAACAATGATCTTCCTTCGATAAATATATGAGAT
AAACCTGAATGCTGAGTGGTAATCATTGCAAACACGAACATTTTTTGTTA
CTTGAATTACTGCTTCTGGGGATAAGATTCATAATTCCAAAAACCACATC
CAGGTTCTCACTGGGGTAATACATCATGAGTTCCCTGTCTTCGACTTCCA
CATCATGTAGAGCGCATGATAGGTCCGGCATGCATCCTGCCATCTTTATC
TCAACTGACATGCTCTCTACTTTCTTGTAAACTTCTTTCC
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